Wall clock time and date at job start Sun Mar 29 2020 22:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.50625 * 2 1 4 4 C 1.54983 * 110.56733 * 237.08281 * 2 1 3 5 5 C 1.55134 * 102.22454 * 204.16846 * 4 2 1 6 6 C 1.51842 * 104.31621 * 37.93393 * 5 4 2 7 7 C 1.33081 * 126.34010 * 156.13186 * 6 5 4 8 8 C 1.46953 * 120.00168 * 179.69422 * 7 6 5 9 9 O 1.21534 * 119.99855 * 359.97438 * 8 7 6 10 10 O 1.34799 * 120.00102 * 180.02562 * 8 7 6 11 11 C 1.45194 * 116.99773 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46979 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.51449 * 107.31714 * 335.87513 * 6 5 4 22 22 H 1.08999 * 109.47230 * 298.69953 * 1 2 3 23 23 H 1.08996 * 109.47066 * 58.70158 * 1 2 3 24 24 H 1.08998 * 109.47092 * 178.69983 * 1 2 3 25 25 H 1.08999 * 110.83975 * 322.56332 * 4 2 1 26 26 H 1.09002 * 110.83277 * 85.94449 * 4 2 1 27 27 H 1.08999 * 110.58026 * 279.19480 * 5 4 2 28 28 H 1.09003 * 110.41314 * 156.59555 * 5 4 2 29 29 H 1.07996 * 119.99905 * 359.69020 * 7 6 5 30 30 H 1.09001 * 109.47510 * 60.00193 * 11 10 8 31 31 H 1.09001 * 109.47429 * 299.99899 * 11 10 8 32 32 H 1.09001 * 109.47002 * 299.99655 * 12 11 10 33 33 H 1.08993 * 109.46955 * 60.00092 * 12 11 10 34 34 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.98362 * 119.94832 * 21 6 5 36 36 H 1.09003 * 109.97993 * 241.20618 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0209 0.0000 4 6 2.0745 -0.7885 -1.2181 5 6 3.4850 -1.2127 -0.7310 6 6 3.2912 -1.5434 0.7382 7 6 4.0545 -2.3490 1.4726 8 6 3.7412 -2.5659 2.8919 9 8 2.7852 -2.0091 3.3951 10 8 4.5146 -3.3816 3.6359 11 6 4.1461 -3.5484 5.0303 12 6 5.1318 -4.5027 5.7077 13 6 4.7490 -4.6764 7.1548 14 1 3.8888 -4.1577 7.5519 15 6 5.4973 -5.4967 7.9722 16 7 6.5449 -6.1279 7.4889 17 14 5.0231 -5.7114 9.7662 18 1 4.0839 -6.8543 9.8966 19 1 6.2418 -5.9779 10.5718 20 1 4.3667 -4.4728 10.2565 21 6 2.0720 -0.7815 1.2147 22 1 -0.3633 0.4935 0.9014 23 1 -0.3633 0.5338 -0.8781 24 1 -0.3633 -1.0274 -0.0233 25 1 1.4534 -1.6601 -1.4249 26 1 2.1432 -0.1465 -2.0962 27 1 4.1930 -0.3920 -0.8463 28 1 3.8275 -2.0917 -1.2772 29 1 4.9041 -2.8435 1.0255 30 1 3.1394 -3.9617 5.0932 31 1 4.1736 -2.5810 5.5318 32 1 5.1038 -5.4701 5.2062 33 1 6.1386 -4.0898 5.6449 34 1 7.0716 -6.7047 8.0640 35 1 1.3159 -1.4779 1.5774 36 1 2.3522 -0.0894 2.0089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754197030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:53 Heat of formation + Delta-G solvation = -121.452292 kcal Electronic energy + Delta-G solvation = -16250.397445 eV Core-core repulsion = 13504.928348 eV Total energy + Delta-G solvation = -2745.469097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38495 -39.48341 -37.55015 -35.45624 -33.86092 -32.34069 -30.80262 -28.37172 -27.07295 -25.35284 -23.22506 -22.30288 -21.05394 -19.59742 -18.93674 -18.13858 -17.48940 -17.04775 -16.66731 -16.43889 -15.44609 -15.06023 -14.60404 -14.40124 -14.37543 -13.95442 -13.70462 -13.15855 -13.12644 -13.01547 -12.65486 -12.59097 -12.50989 -12.35839 -11.79637 -11.78928 -11.56474 -11.49575 -11.48453 -11.41033 -11.15368 -10.63385 -10.24210 -8.28662 -6.42518 0.12066 1.39777 1.42234 1.53411 1.83445 1.94096 2.39549 3.05386 3.38006 3.66565 3.89288 3.98822 4.16685 4.19507 4.24692 4.32052 4.47122 4.55488 4.66400 4.67879 4.84580 4.89600 4.97916 5.02567 5.15128 5.17072 5.20702 5.31482 5.38976 5.41789 5.43491 5.53167 5.58687 5.72958 6.04483 6.70064 6.79619 7.27352 8.84220 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058439 B = 0.003725 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.013448 B = 7514.675333 C = 7913.502885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.096 4.096 6 C -0.009 4.009 7 C -0.218 4.218 8 C 0.481 3.519 9 O -0.545 6.545 10 O -0.367 6.367 11 C 0.092 3.908 12 C 0.031 3.969 13 C -0.552 4.552 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.976 3.024 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.102 4.102 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.161 0.839 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 11.719 -19.005 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.132 4.132 6 C -0.010 4.010 7 C -0.236 4.236 8 C 0.330 3.670 9 O -0.439 6.439 10 O -0.284 6.284 11 C 0.019 3.981 12 C -0.006 4.006 13 C -0.590 4.590 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.566 5.566 17 Si 0.799 3.201 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.139 4.139 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.179 0.821 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.467 11.744 -18.778 23.711 hybrid contribution 0.004 -0.455 1.461 1.530 sum -8.463 11.289 -17.317 22.337 Atomic orbital electron populations 1.21794 0.94240 1.01885 1.02221 1.22079 0.96311 0.99511 0.93681 0.89400 1.22683 0.94366 1.00378 0.97688 1.21788 0.99482 1.03596 0.88354 1.23446 0.91813 0.88364 0.97383 1.21340 1.06045 1.07753 0.88499 1.22246 0.79751 0.75578 0.89435 1.90767 1.29714 1.48615 1.74797 1.86602 1.54800 1.61685 1.25293 1.23115 0.99303 0.99914 0.75797 1.18981 0.93852 0.93374 0.94417 1.21375 1.13661 1.28939 0.95022 0.91727 1.25998 0.94500 0.94644 1.04212 1.70095 1.18191 1.30086 1.38242 0.85284 0.77990 0.79022 0.77755 1.19436 1.20229 1.18734 1.21555 0.95180 0.98478 0.98705 0.93248 0.90750 0.93048 0.90890 0.88357 0.87146 0.88332 0.82120 0.92431 0.92426 0.97591 0.97574 0.92254 0.91236 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.12 71.98 0.66 -1.39 16 2 C -0.10 -1.47 3.49 -9.68 -0.03 -1.51 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.11 -1.28 6.39 32.00 0.20 -1.07 16 5 C -0.10 -1.24 6.66 30.94 0.21 -1.03 16 6 C -0.01 -0.21 6.15 -17.00 -0.10 -0.31 16 7 C -0.22 -6.01 10.06 23.40 0.24 -5.78 16 8 C 0.48 18.40 7.90 70.11 0.55 18.95 16 9 O -0.55 -22.78 13.90 19.72 0.27 -22.50 16 10 O -0.37 -16.15 10.23 -57.10 -0.58 -16.74 16 11 C 0.09 4.43 5.42 71.98 0.39 4.82 16 12 C 0.03 1.74 5.35 29.85 0.16 1.90 16 13 C -0.55 -32.33 9.11 25.60 0.23 -32.09 16 14 H 0.06 3.62 7.74 -2.91 -0.02 3.60 16 15 C 0.01 0.31 5.46 84.65 0.46 0.78 16 16 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 17 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.10 -2.39 4.40 30.52 0.13 -2.25 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 25 H 0.07 0.85 8.05 -2.39 -0.02 0.83 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.07 1.92 7.35 -2.39 -0.02 1.90 16 36 H 0.07 1.84 7.69 -2.39 -0.02 1.82 16 Total: -1.00 -69.08 304.52 6.13 -62.95 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.04 Total: 5.17 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 3.10 Total: -18.99 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.32 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.31 Total: -39.24 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.08 6.13 -62.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754197030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.501 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds