Wall clock time and date at job start Sun Mar 29 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.50868 * 2 1 4 4 C 1.54989 * 110.56937 * 122.75141 * 2 1 3 5 5 C 1.54888 * 102.33019 * 155.65351 * 4 2 1 6 6 C 1.51845 * 104.43299 * 322.37512 * 5 4 2 7 7 C 1.33080 * 126.33801 * 203.76672 * 6 5 4 8 8 C 1.46959 * 120.00317 * 0.03086 * 7 6 5 9 9 O 1.21533 * 119.99678 * 359.97438 * 8 7 6 10 10 O 1.34797 * 120.00095 * 179.97438 * 8 7 6 11 11 C 1.45194 * 116.99990 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47297 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47211 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27574 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.51441 * 107.32091 * 24.03301 * 6 5 4 22 22 H 1.09004 * 109.47467 * 297.24558 * 1 2 3 23 23 H 1.09000 * 109.47212 * 57.24832 * 1 2 3 24 24 H 1.09007 * 109.46933 * 177.24978 * 1 2 3 25 25 H 1.08992 * 110.83117 * 37.44303 * 4 2 1 26 26 H 1.08995 * 110.83021 * 273.85947 * 4 2 1 27 27 H 1.08999 * 110.43953 * 203.63671 * 5 4 2 28 28 H 1.09001 * 110.54844 * 81.16711 * 5 4 2 29 29 H 1.08002 * 120.00302 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47795 * 59.99434 * 11 10 8 31 31 H 1.09007 * 109.47045 * 299.99210 * 11 10 8 32 32 H 1.09000 * 109.47211 * 59.99014 * 12 11 10 33 33 H 1.09007 * 109.46376 * 299.99556 * 12 11 10 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.98535 * 118.74786 * 21 6 5 36 36 H 1.08999 * 109.98511 * 240.05580 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 6 2.0745 -0.7850 1.2204 5 6 3.4815 -1.2152 0.7360 6 6 3.2911 -1.5453 -0.7338 7 6 4.0545 -2.3530 -1.4659 8 6 5.2108 -3.0241 -0.8557 9 8 5.4700 -2.8411 0.3175 10 8 5.9837 -3.8425 -1.5971 11 6 7.1084 -4.4719 -0.9284 12 6 7.8629 -5.3568 -1.9226 13 6 9.0305 -6.0095 -1.2286 14 1 9.2162 -5.8125 -0.1831 15 6 9.8653 -6.8533 -1.9300 16 7 9.6394 -7.0930 -3.2033 17 14 11.3173 -7.6562 -1.0718 18 1 10.8269 -8.4912 0.0542 19 1 12.0523 -8.5115 -2.0381 20 1 12.2266 -6.6050 -0.5492 21 6 2.0756 -0.7802 -1.2141 22 1 -0.3634 0.4705 0.9137 23 1 -0.3633 0.5560 -0.8643 24 1 -0.3633 -1.0266 -0.0493 25 1 1.4535 -1.6559 1.4295 26 1 2.1465 -0.1396 2.0957 27 1 3.8199 -2.0950 1.2831 28 1 4.1930 -0.3978 0.8536 29 1 3.8244 -2.5153 -2.5086 30 1 6.7446 -5.0820 -0.1016 31 1 7.7795 -3.7032 -0.5448 32 1 8.2267 -4.7464 -2.7491 33 1 7.1920 -6.1255 -2.3065 34 1 10.2270 -7.6864 -3.6968 35 1 2.3602 -0.0884 -2.0068 36 1 1.3187 -1.4744 -1.5790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754197032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:00 Heat of formation + Delta-G solvation = -103.398514 kcal Electronic energy + Delta-G solvation = -16189.977189 eV Core-core repulsion = 13445.290962 eV Total energy + Delta-G solvation = -2744.686227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92649 -38.53680 -35.97501 -33.30931 -32.86072 -30.38782 -29.86923 -27.63202 -25.18985 -24.03981 -21.72366 -20.70881 -20.24012 -18.46390 -17.30514 -16.29337 -16.01815 -15.75267 -15.15371 -14.76074 -14.45866 -13.86134 -13.46272 -13.22166 -12.99926 -12.64123 -12.34946 -12.22217 -11.85351 -11.35041 -11.18129 -11.14211 -11.00828 -10.98856 -10.76818 -10.68138 -10.63894 -9.94192 -9.60051 -9.52605 -9.27776 -9.17417 -8.41637 -6.07909 -4.12285 1.28537 3.27306 3.30253 3.31674 3.35585 3.40548 4.27175 4.40652 4.44513 4.61583 4.88248 5.11056 5.19090 5.22044 5.28407 5.30149 5.41896 5.44191 5.55226 5.62851 5.79547 5.83092 5.91304 6.05700 6.13147 6.14932 6.15296 6.33191 6.46124 6.69066 7.09625 7.59771 7.66372 7.90192 8.24436 8.35916 8.93195 9.51868 11.03675 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.077481 B = 0.003534 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.292224 B = 7920.366265 C = 8196.364028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.032 4.032 7 C -0.191 4.191 8 C 0.489 3.511 9 O -0.521 6.521 10 O -0.355 6.355 11 C 0.076 3.924 12 C 0.024 3.976 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.097 4.097 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.122 13.641 4.590 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.144 4.144 6 C -0.033 4.033 7 C -0.210 4.210 8 C 0.336 3.664 9 O -0.414 6.414 10 O -0.271 6.271 11 C 0.004 3.996 12 C -0.013 4.013 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.937 13.556 4.759 22.209 hybrid contribution 0.944 -0.524 0.366 1.140 sum -15.993 13.032 5.126 21.257 Atomic orbital electron populations 1.21809 0.94630 1.01999 1.01735 1.22004 0.95687 0.99352 0.94661 0.90385 1.22668 0.96118 0.99836 0.97372 1.21788 0.96905 1.03302 0.92372 1.22954 0.93078 0.91089 0.96170 1.21305 0.96174 1.02278 1.01210 1.21347 0.82900 0.77382 0.84753 1.90753 1.71017 1.62178 1.17448 1.86616 1.40395 1.55883 1.44197 1.23601 0.83410 0.95388 0.97250 1.19163 0.94134 0.93795 0.94177 1.20956 1.10955 1.27783 0.96789 0.92314 1.24983 0.97942 0.96361 0.94873 1.69965 1.38426 1.36593 1.07933 0.86530 0.82173 0.79334 0.79236 1.20068 1.21124 1.20073 1.21421 0.94963 0.98489 0.98477 0.92480 0.92616 0.92451 0.91132 0.91087 0.88256 0.89595 0.84264 0.92400 0.92409 0.95378 0.95379 0.92665 0.89803 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.15 37.16 0.34 -0.56 16 2 C -0.10 -0.75 3.48 -88.90 -0.31 -1.06 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -1.08 6.38 -24.68 -0.16 -1.24 16 5 C -0.11 -1.27 5.41 -26.32 -0.14 -1.41 16 6 C -0.03 -0.38 6.15 -100.21 -0.62 -1.00 16 7 C -0.19 -2.69 10.06 -37.84 -0.38 -3.07 16 8 C 0.49 9.11 7.91 34.26 0.27 9.38 16 9 O -0.52 -10.49 13.55 -19.29 -0.26 -10.76 16 10 O -0.35 -7.54 10.23 -40.76 -0.42 -7.95 16 11 C 0.08 1.77 5.42 37.16 0.20 1.97 16 12 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 13 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 C -0.10 -0.82 6.21 -26.85 -0.17 -0.99 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.36 8.08 -51.92 -0.42 -0.06 16 25 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.42 6.27 -51.93 -0.33 1.10 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.66 7.79 -51.93 -0.40 0.25 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -31.22 303.72 -7.67 -38.89 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.76 Total: -4.11 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.52 Total: -11.25 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.68 Total: -18.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.22 -7.67 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754197032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.512 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds