Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.56010 * 2 1 4 4 C 1.50705 * 109.47342 * 279.29284 * 3 2 1 5 5 O 1.20829 * 119.99739 * 4.76682 * 4 3 2 6 6 O 1.34225 * 120.00178 * 184.77369 * 4 3 2 7 7 C 1.45200 * 116.99905 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47300 * 179.97438 * 7 6 4 9 9 C 1.50700 * 115.54915 * 65.08367 * 8 7 6 10 10 H 1.08006 * 119.99727 * 264.81085 * 9 8 7 11 11 C 1.37871 * 120.00210 * 84.81335 * 9 8 7 12 12 N 1.31515 * 119.99997 * 2.00618 * 11 9 8 13 13 Si 1.86795 * 120.00215 * 182.00318 * 11 9 8 14 14 H 1.48498 * 109.46950 * 60.00366 * 13 11 9 15 15 H 1.48503 * 109.47369 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47365 * 300.00163 * 13 11 9 17 17 C 1.53004 * 117.49515 * 279.41347 * 8 7 6 18 18 C 1.52996 * 117.49975 * 210.75483 * 8 7 6 19 19 C 1.52993 * 117.49992 * 145.68754 * 2 1 3 20 20 C 1.52999 * 117.49777 * 214.31128 * 2 1 3 21 21 H 1.09005 * 109.46685 * 210.10917 * 1 2 3 22 22 H 1.09003 * 109.46947 * 330.10542 * 1 2 3 23 23 H 1.08999 * 109.47361 * 90.10663 * 1 2 3 24 24 H 1.09003 * 109.47383 * 39.29323 * 3 2 1 25 25 H 1.08998 * 109.47056 * 159.29329 * 3 2 1 26 26 H 1.09007 * 109.46970 * 299.99610 * 7 6 4 27 27 H 1.09000 * 109.47566 * 59.99485 * 7 6 4 28 28 H 0.97001 * 120.00539 * 179.97438 * 12 11 9 29 29 H 1.08991 * 117.49962 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.49335 * 145.01633 * 17 8 7 31 31 H 1.09000 * 117.50116 * 214.97662 * 18 8 7 32 32 H 1.09001 * 117.50149 * 359.97438 * 18 8 7 33 33 H 1.09002 * 117.50210 * 214.97952 * 19 2 1 34 34 H 1.09004 * 117.50111 * 0.02562 * 19 2 1 35 35 H 1.09002 * 117.49790 * 0.02562 * 20 2 1 36 36 H 1.09000 * 117.49638 * 145.01619 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.1999 1.9325 -1.4022 5 8 1.6516 1.3281 -2.2933 6 8 2.8178 3.0955 -1.6612 7 6 2.7876 3.5666 -3.0343 8 6 3.5370 4.8967 -3.1339 9 6 5.0150 4.8331 -2.8463 10 1 5.3824 5.0560 -1.8554 11 6 5.8981 4.4906 -3.8481 12 7 5.4549 4.2578 -5.0642 13 14 7.7242 4.3572 -3.4781 14 1 7.9438 3.3216 -2.4367 15 1 8.4534 3.9772 -4.7147 16 1 8.2270 5.6659 -2.9887 17 6 2.7887 6.1625 -2.7109 18 6 3.0657 5.8957 -4.1925 19 6 2.2364 -1.1209 0.7650 20 6 2.2364 -1.1210 -0.7650 21 1 -0.3633 -0.8891 0.5156 22 1 -0.3633 0.8910 0.5122 23 1 -0.3634 -0.0019 -1.0276 24 1 1.6294 2.0512 0.6508 25 1 3.2141 1.2933 0.3634 26 1 3.2652 2.8308 -3.6814 27 1 1.7531 3.7085 -3.3471 28 1 6.0762 4.0171 -5.7692 29 1 1.7628 6.0475 -2.3614 30 1 3.3656 6.9494 -2.2249 31 1 3.8245 6.5072 -4.6808 32 1 2.2219 5.6051 -4.8184 33 1 3.1715 -0.8751 1.2683 34 1 1.6112 -1.8587 1.2680 35 1 1.6111 -1.8582 -1.2686 36 1 3.1714 -0.8751 -1.2683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759542464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = -48.646835 kcal Electronic energy + Delta-G solvation = -17065.612959 eV Core-core repulsion = 14323.300943 eV Total energy + Delta-G solvation = -2742.312016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92165 -37.94297 -36.55723 -35.07800 -31.94961 -29.98085 -28.26633 -26.55444 -25.17091 -22.41251 -21.29665 -20.82794 -19.25935 -18.73814 -16.88596 -16.42648 -15.84955 -15.44905 -14.90195 -14.57871 -14.27211 -13.78126 -13.26967 -12.86105 -12.62298 -12.21517 -11.99787 -11.72384 -11.60521 -11.46520 -11.14604 -10.93995 -10.86697 -10.55125 -10.29159 -10.24972 -9.96309 -9.81332 -9.67609 -9.40408 -8.88831 -8.44793 -8.18479 -6.05740 -4.12083 2.85143 3.26270 3.30441 3.34855 3.37401 3.96176 4.39077 4.63180 4.76995 4.95549 5.00115 5.23066 5.27346 5.52802 5.59757 5.64189 5.66727 5.84354 5.90285 6.00135 6.00540 6.04404 6.18575 6.26364 6.30152 6.34228 6.54078 6.69152 6.75725 7.05882 7.29792 7.38582 7.52908 7.86271 8.37912 8.52659 8.89418 9.53737 11.03219 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.006502 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.975800 B = 4305.565686 C = 4928.125882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C -0.079 4.079 4 C 0.451 3.549 5 O -0.516 6.516 6 O -0.341 6.341 7 C 0.118 3.882 8 C 0.034 3.966 9 C -0.489 4.489 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.883 5.883 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.206 4.206 18 C -0.141 4.141 19 C -0.175 4.175 20 C -0.158 4.158 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 -6.686 9.408 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.117 4.117 4 C 0.294 3.706 5 O -0.405 6.405 6 O -0.256 6.256 7 C 0.044 3.956 8 C 0.034 3.966 9 C -0.526 4.526 10 H 0.080 0.920 11 C -0.135 4.135 12 N -0.519 5.519 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.243 4.243 18 C -0.178 4.178 19 C -0.212 4.212 20 C -0.195 4.195 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.872 -6.876 8.906 13.184 hybrid contribution 0.995 -0.130 -0.139 1.013 sum -5.877 -7.006 8.768 12.669 Atomic orbital electron populations 1.21325 0.91675 1.01431 1.02452 1.21110 0.95044 0.89471 1.06099 1.20909 1.03482 0.95034 0.92260 1.23507 0.75644 0.79876 0.91564 1.90598 1.42743 1.59407 1.47799 1.86522 1.68397 1.36083 1.34645 1.22838 0.97566 0.97755 0.77396 1.18788 0.93931 0.84396 0.99492 1.20352 0.88466 1.47445 0.96375 0.91986 1.25018 0.98806 0.94748 0.94950 1.69989 1.34856 1.46204 1.00900 0.86642 0.84983 0.78671 0.77637 1.20157 1.21257 1.20117 1.23001 0.99204 1.03260 0.98871 1.22519 1.01004 1.04245 0.90075 1.23224 1.02232 1.00614 0.95104 1.22922 1.02500 1.00697 0.93418 0.92619 0.92371 0.91567 0.87678 0.87985 0.91036 0.94352 0.92869 0.91615 0.90116 0.89238 0.91770 0.88735 0.88753 0.88764 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.74 37.16 0.36 -0.93 16 2 C -0.12 -1.49 1.59 -154.51 -0.25 -1.73 16 3 C -0.08 -1.10 5.74 -27.88 -0.16 -1.26 16 4 C 0.45 8.62 7.82 36.01 0.28 8.90 16 5 O -0.52 -10.91 15.14 -18.75 -0.28 -11.19 16 6 O -0.34 -7.54 10.16 -39.24 -0.40 -7.94 16 7 C 0.12 2.83 5.29 37.16 0.20 3.03 16 8 C 0.03 0.87 1.66 -155.66 -0.26 0.61 16 9 C -0.49 -13.43 8.77 -34.44 -0.30 -13.73 16 10 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 11 C 0.07 1.86 5.42 -17.82 -0.10 1.77 16 12 N -0.88 -25.08 12.72 55.43 0.71 -24.38 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 18 C -0.14 -3.32 9.22 -26.69 -0.25 -3.57 16 19 C -0.17 -1.84 9.82 -26.73 -0.26 -2.11 16 20 C -0.16 -2.06 9.15 -26.73 -0.24 -2.31 16 21 H 0.05 0.53 7.88 -51.93 -0.41 0.13 16 22 H 0.06 0.62 7.92 -51.93 -0.41 0.20 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.11 1.24 7.97 -51.93 -0.41 0.83 16 25 H 0.10 1.31 7.94 -51.93 -0.41 0.90 16 26 H 0.07 1.89 8.13 -51.93 -0.42 1.47 16 27 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.09 2.23 8.14 -51.93 -0.42 1.80 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -29.81 310.23 -7.40 -37.20 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.83 Total: 1.63 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.24 Total: -16.16 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.71 Total: -24.38 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.68 Total: -19.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.81 -7.40 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759542464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.444 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds