Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.56010 * 2 1 4 4 C 1.50705 * 109.47342 * 279.29284 * 3 2 1 5 5 O 1.20829 * 119.99739 * 4.76682 * 4 3 2 6 6 O 1.34225 * 120.00178 * 184.77369 * 4 3 2 7 7 C 1.45200 * 116.99905 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47300 * 179.97438 * 7 6 4 9 9 C 1.50700 * 115.54915 * 65.08367 * 8 7 6 10 10 H 1.08006 * 119.99727 * 264.81085 * 9 8 7 11 11 C 1.37871 * 120.00210 * 84.81335 * 9 8 7 12 12 N 1.31515 * 119.99997 * 2.00618 * 11 9 8 13 13 Si 1.86795 * 120.00215 * 182.00318 * 11 9 8 14 14 H 1.48498 * 109.46950 * 60.00366 * 13 11 9 15 15 H 1.48503 * 109.47369 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47365 * 300.00163 * 13 11 9 17 17 C 1.53004 * 117.49515 * 279.41347 * 8 7 6 18 18 C 1.52996 * 117.49975 * 210.75483 * 8 7 6 19 19 C 1.52993 * 117.49992 * 145.68754 * 2 1 3 20 20 C 1.52999 * 117.49777 * 214.31128 * 2 1 3 21 21 H 1.09005 * 109.46685 * 210.10917 * 1 2 3 22 22 H 1.09003 * 109.46947 * 330.10542 * 1 2 3 23 23 H 1.08999 * 109.47361 * 90.10663 * 1 2 3 24 24 H 1.09003 * 109.47383 * 39.29323 * 3 2 1 25 25 H 1.08998 * 109.47056 * 159.29329 * 3 2 1 26 26 H 1.09007 * 109.46970 * 299.99610 * 7 6 4 27 27 H 1.09000 * 109.47566 * 59.99485 * 7 6 4 28 28 H 0.97001 * 120.00539 * 179.97438 * 12 11 9 29 29 H 1.08991 * 117.49962 * 0.02562 * 17 8 7 30 30 H 1.09001 * 117.49335 * 145.01633 * 17 8 7 31 31 H 1.09000 * 117.50116 * 214.97662 * 18 8 7 32 32 H 1.09001 * 117.50149 * 359.97438 * 18 8 7 33 33 H 1.09002 * 117.50210 * 214.97952 * 19 2 1 34 34 H 1.09004 * 117.50111 * 0.02562 * 19 2 1 35 35 H 1.09002 * 117.49790 * 0.02562 * 20 2 1 36 36 H 1.09000 * 117.49638 * 145.01619 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.1999 1.9325 -1.4022 5 8 1.6516 1.3281 -2.2933 6 8 2.8178 3.0955 -1.6612 7 6 2.7876 3.5666 -3.0343 8 6 3.5370 4.8967 -3.1339 9 6 5.0150 4.8331 -2.8463 10 1 5.3824 5.0560 -1.8554 11 6 5.8981 4.4906 -3.8481 12 7 5.4549 4.2578 -5.0642 13 14 7.7242 4.3572 -3.4781 14 1 7.9438 3.3216 -2.4367 15 1 8.4534 3.9772 -4.7147 16 1 8.2270 5.6659 -2.9887 17 6 2.7887 6.1625 -2.7109 18 6 3.0657 5.8957 -4.1925 19 6 2.2364 -1.1209 0.7650 20 6 2.2364 -1.1210 -0.7650 21 1 -0.3633 -0.8891 0.5156 22 1 -0.3633 0.8910 0.5122 23 1 -0.3634 -0.0019 -1.0276 24 1 1.6294 2.0512 0.6508 25 1 3.2141 1.2933 0.3634 26 1 3.2652 2.8308 -3.6814 27 1 1.7531 3.7085 -3.3471 28 1 6.0762 4.0171 -5.7692 29 1 1.7628 6.0475 -2.3614 30 1 3.3656 6.9494 -2.2249 31 1 3.8245 6.5072 -4.6808 32 1 2.2219 5.6051 -4.8184 33 1 3.1715 -0.8751 1.2683 34 1 1.6112 -1.8587 1.2680 35 1 1.6111 -1.8582 -1.2686 36 1 3.1714 -0.8751 -1.2683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759542464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = -63.592307 kcal Electronic energy + Delta-G solvation = -17066.261043 eV Core-core repulsion = 14323.300943 eV Total energy + Delta-G solvation = -2742.960100 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44665 -39.19488 -38.24688 -36.78182 -34.03186 -31.17800 -29.30380 -28.31804 -27.19087 -23.35777 -23.04060 -22.36118 -21.20233 -19.85683 -18.52307 -18.24404 -17.42699 -16.96638 -16.60900 -16.10914 -15.53155 -15.35950 -14.88499 -14.14567 -14.01920 -13.65881 -13.51429 -13.29508 -12.92130 -12.89620 -12.82151 -12.43236 -12.36005 -12.15433 -12.08843 -11.66615 -11.64961 -11.38823 -11.04801 -10.87680 -10.62771 -10.46488 -10.07996 -8.14570 -6.26977 1.33278 1.41050 1.42295 1.49868 1.82693 2.40880 2.90326 3.14217 3.45064 3.62497 3.80251 3.90509 4.05628 4.13908 4.17093 4.37213 4.46487 4.56765 4.65105 4.65865 4.79074 4.84493 4.94716 4.96056 4.98926 5.05126 5.12558 5.17902 5.26634 5.38052 5.45412 5.59167 5.72383 5.78053 6.34378 6.78460 6.91923 7.41889 8.93834 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.006502 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.975800 B = 4305.565686 C = 4928.125882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C -0.073 4.073 4 C 0.445 3.555 5 O -0.541 6.541 6 O -0.352 6.352 7 C 0.131 3.869 8 C 0.000 4.000 9 C -0.504 4.504 10 H 0.056 0.944 11 C 0.021 3.979 12 N -0.911 5.911 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.177 4.177 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.184 4.184 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.041 0.959 24 H 0.134 0.866 25 H 0.115 0.885 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -6.979 11.678 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.110 4.110 4 C 0.290 3.710 5 O -0.432 6.432 6 O -0.269 6.269 7 C 0.058 3.942 8 C 0.000 4.000 9 C -0.542 4.542 10 H 0.074 0.926 11 C -0.179 4.179 12 N -0.549 5.549 13 Si 0.778 3.222 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.214 4.214 18 C -0.181 4.181 19 C -0.177 4.177 20 C -0.221 4.221 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.151 0.849 25 H 0.133 0.867 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.144 -7.168 11.195 15.092 hybrid contribution 1.035 -0.073 -0.833 1.331 sum -6.110 -7.241 10.362 14.041 Atomic orbital electron populations 1.21322 0.90883 1.03110 1.01362 1.21244 0.95751 0.88940 1.07234 1.21110 1.05020 0.96069 0.88781 1.24639 0.74285 0.78610 0.93499 1.90586 1.43733 1.59687 1.49189 1.86531 1.69375 1.37757 1.33191 1.22416 0.97292 0.96376 0.78161 1.18909 0.93620 0.85851 1.01660 1.20619 0.90076 1.47355 0.96125 0.92608 1.25749 1.02904 0.94491 0.94789 1.70101 1.36080 1.47107 1.01623 0.85692 0.80089 0.78942 0.77458 1.19802 1.21018 1.19145 1.23011 1.00086 1.01050 0.97284 1.22438 1.00877 1.03722 0.91046 1.23318 1.02460 0.98976 0.92978 1.22906 1.01828 1.01686 0.95670 0.90398 0.91305 0.94016 0.84853 0.86650 0.94759 0.93485 0.93012 0.89055 0.89607 0.91168 0.90611 0.87537 0.86363 0.88693 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.74 71.98 0.70 -1.60 16 2 C -0.13 -3.06 1.59 -52.18 -0.08 -3.15 16 3 C -0.07 -1.88 5.74 29.85 0.17 -1.71 16 4 C 0.44 16.87 7.82 71.24 0.56 17.42 16 5 O -0.54 -23.28 15.14 21.95 0.33 -22.95 16 6 O -0.35 -15.57 10.16 -51.37 -0.52 -16.09 16 7 C 0.13 6.42 5.29 71.98 0.38 6.80 16 8 C 0.00 0.00 1.66 -52.93 -0.09 -0.09 16 9 C -0.50 -27.91 8.77 25.60 0.22 -27.68 16 10 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.02 1.15 5.42 84.65 0.46 1.61 16 12 N -0.91 -52.82 12.72 21.45 0.27 -52.54 16 13 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 C -0.18 -7.57 9.96 30.62 0.30 -7.27 16 18 C -0.14 -6.75 9.22 30.62 0.28 -6.47 16 19 C -0.14 -2.52 9.82 30.59 0.30 -2.22 16 20 C -0.18 -4.64 9.15 30.59 0.28 -4.36 16 21 H 0.08 1.26 7.88 -2.38 -0.02 1.24 16 22 H 0.07 1.28 7.92 -2.39 -0.02 1.26 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.13 2.71 7.97 -2.39 -0.02 2.69 16 25 H 0.12 2.69 7.94 -2.39 -0.02 2.67 16 26 H 0.03 1.89 8.13 -2.38 -0.02 1.87 16 27 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.12 1.60 8.03 -2.38 -0.02 1.58 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -64.91 310.23 6.64 -58.27 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.04 Total: 16.38 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 3.49 Total: -28.70 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.27 Total: -52.54 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.19 Total: -39.05 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.91 6.64 -58.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759542464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.324 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds