Wall clock time and date at job start Sun Mar 29 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99882 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00057 * 179.97438 * 13 12 11 16 16 H 1.08999 * 115.55169 * 34.42006 * 15 13 12 17 17 C 1.53117 * 117.51399 * 248.68004 * 15 13 12 18 18 C 1.52461 * 117.51230 * 180.15098 * 15 13 12 19 19 C 1.53254 * 128.58602 * 349.84855 * 18 15 13 20 20 C 1.53886 * 86.88334 * 194.88720 * 19 18 15 21 21 C 1.53254 * 128.58669 * 225.04956 * 18 15 13 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 28 28 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 29 29 H 1.09002 * 117.51274 * 0.02562 * 17 15 13 30 30 H 1.09004 * 117.51126 * 145.06092 * 17 15 13 31 31 H 1.08996 * 113.64721 * 309.38773 * 19 18 15 32 32 H 1.09007 * 113.64641 * 80.39286 * 19 18 15 33 33 H 1.08996 * 113.59019 * 270.38984 * 20 19 18 34 34 H 1.08999 * 113.65867 * 139.58215 * 20 19 18 35 35 H 1.09005 * 113.64679 * 279.61654 * 21 18 15 36 36 H 1.09000 * 113.64286 * 50.52363 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8290 -8.5262 0.0019 16 1 3.7587 -8.4049 0.5577 17 6 2.8683 -9.3880 -1.2631 18 6 2.1856 -9.9084 -0.0016 19 6 0.7128 -10.2777 0.2060 20 6 1.1926 -11.7244 0.4185 21 6 2.5479 -11.1334 0.8451 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8906 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0451 -0.8886 29 1 2.2304 -9.0901 -2.0953 30 1 3.8240 -9.8335 -1.5394 31 1 0.2706 -9.8287 1.0952 32 1 0.0995 -10.1471 -0.6857 33 1 1.2410 -12.3075 -0.5011 34 1 0.6712 -12.2445 1.2221 35 1 3.4058 -11.6888 0.4659 36 1 2.6179 -10.9221 1.9121 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759856978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:12 Heat of formation + Delta-G solvation = -79.813874 kcal Electronic energy + Delta-G solvation = -16253.980314 eV Core-core repulsion = 13510.316794 eV Total energy + Delta-G solvation = -2743.663520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86636 -40.10669 -37.80844 -36.30682 -34.79217 -33.65339 -28.90640 -26.66246 -26.20985 -24.68727 -24.00576 -22.49876 -21.57856 -19.35391 -19.16150 -18.64155 -17.77190 -17.37798 -16.20922 -16.13748 -15.74872 -15.65804 -15.44025 -14.76301 -14.08167 -13.84345 -13.53905 -13.30485 -13.07700 -12.71734 -12.68826 -12.51574 -12.38364 -12.19102 -12.10990 -11.90258 -11.61204 -11.56211 -11.16677 -11.09655 -10.84378 -10.73027 -10.58658 -8.73845 -6.45129 0.97490 1.49389 1.53365 1.62071 1.80137 2.55459 2.61047 3.11955 3.30163 3.54239 3.60705 3.79254 3.83064 3.87422 3.90379 3.94647 4.23672 4.45472 4.52847 4.58242 4.67180 4.71909 4.82505 4.83783 4.85049 4.93806 5.08484 5.09899 5.22591 5.31612 5.35440 5.40713 5.48198 5.91635 6.12908 6.50484 6.64040 7.37413 8.67315 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.074717 B = 0.003475 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.657383 B = 8055.123258 C = 8265.319503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.040 4.040 3 Si 1.124 2.876 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.620 4.620 8 H 0.056 0.944 9 C 0.010 3.990 10 C -0.088 4.088 11 C 0.079 3.921 12 O -0.357 6.357 13 C 0.481 3.519 14 O -0.536 6.536 15 C -0.171 4.171 16 H 0.155 0.845 17 C -0.101 4.101 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.130 4.130 21 C -0.087 4.087 22 H 0.255 0.745 23 H -0.006 1.006 24 H -0.006 1.006 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -23.701 -0.169 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.944 3.056 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.658 4.658 8 H 0.075 0.925 9 C -0.027 4.027 10 C -0.125 4.125 11 C 0.005 3.995 12 O -0.274 6.274 13 C 0.326 3.674 14 O -0.426 6.426 15 C -0.190 4.190 16 H 0.172 0.828 17 C -0.138 4.138 18 C -0.133 4.133 19 C -0.140 4.140 20 C -0.167 4.167 21 C -0.124 4.124 22 H 0.065 0.935 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.544 -22.092 -0.170 23.346 hybrid contribution -0.624 -1.130 0.049 1.292 sum 6.920 -23.223 -0.121 24.232 Atomic orbital electron populations 1.70895 1.08034 1.29903 1.48646 1.27560 0.96587 1.07099 0.92495 0.82860 0.74182 0.70620 0.77920 1.19637 1.19096 1.20784 1.22462 0.94972 0.92946 1.55430 0.92529 1.19112 0.94948 0.93930 0.94734 1.21328 0.98477 0.90118 1.02604 1.23092 0.90971 0.83794 1.01645 1.86483 1.41924 1.15508 1.83461 1.23465 0.88201 0.84410 0.71331 1.90629 1.18226 1.86927 1.46834 1.21864 1.01570 0.86831 1.08693 0.82765 1.23058 1.03763 0.97621 0.89357 1.22745 0.97833 0.91444 1.01284 1.22431 0.93294 0.97010 1.01261 1.22784 0.96530 0.94779 1.02584 1.22534 0.98657 0.92045 0.99132 0.93544 0.98805 0.98786 0.91482 0.91504 0.92061 0.92020 0.88761 0.83624 0.91293 0.92651 0.88792 0.90174 0.88704 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 13.65 21.45 0.29 -58.94 16 2 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 3 Si 1.12 50.58 29.90 68.60 2.05 52.64 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.62 -36.07 9.11 25.60 0.23 -35.84 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.01 0.53 4.28 29.85 0.13 0.66 16 10 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 11 C 0.08 3.05 5.47 71.98 0.39 3.44 16 12 O -0.36 -12.46 10.22 -51.43 -0.53 -12.98 16 13 C 0.48 15.21 7.74 71.24 0.55 15.76 16 14 O -0.54 -19.80 14.89 21.96 0.33 -19.48 16 15 C -0.17 -3.68 6.30 -11.68 -0.07 -3.75 16 16 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.10 -1.64 10.24 30.50 0.31 -1.33 16 18 C -0.13 -2.41 2.88 -52.33 -0.15 -2.56 16 19 C -0.10 -2.12 6.47 30.98 0.20 -1.92 16 20 C -0.13 -1.70 8.08 31.19 0.25 -1.45 16 21 C -0.09 -1.07 8.10 30.98 0.25 -0.81 16 22 H 0.26 16.34 7.22 -92.71 -0.67 15.67 16 23 H -0.01 -0.36 8.01 -2.39 -0.02 -0.38 16 24 H -0.01 -0.35 8.01 -2.38 -0.02 -0.37 16 25 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 28 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.67 8.05 -2.39 -0.02 1.66 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.15 306.38 6.01 -64.14 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.14 Total: 7.95 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 2.73 Total: -33.33 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.29 Total: -58.94 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.20 Total: -32.46 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.64 kcal Total: -70.15 6.01 -64.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759856978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.677 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds