Wall clock time and date at job start Sun Mar 29 2020 22:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.34233 * 117.00244 * 179.97438 * 12 11 10 14 14 O 1.20825 * 119.99777 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99799 * 180.02562 * 13 12 11 16 16 H 1.08998 * 115.52776 * 325.58301 * 15 13 12 17 17 C 1.53006 * 117.45929 * 111.08625 * 15 13 12 18 18 H 1.09003 * 119.29610 * 356.28671 * 17 15 13 19 19 C 1.56218 * 116.99815 * 200.70337 * 17 15 13 20 20 C 1.54890 * 104.22652 * 272.14294 * 19 17 15 21 21 C 1.54893 * 102.74905 * 38.32816 * 20 19 17 22 22 C 1.53000 * 117.45476 * 180.08626 * 15 13 12 23 23 H 1.09000 * 119.30417 * 3.71234 * 22 15 13 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 1.08999 * 110.13629 * 153.61419 * 19 17 15 32 32 H 1.09000 * 110.91080 * 31.05064 * 19 17 15 33 33 H 1.09001 * 110.75165 * 280.01521 * 20 19 17 34 34 H 1.08996 * 110.91156 * 156.72159 * 20 19 17 35 35 H 1.08996 * 110.48713 * 203.37804 * 21 20 19 36 36 H 1.08997 * 110.59320 * 80.79030 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 8 2.4237 -6.0907 -0.0024 13 6 1.9106 -7.3311 -0.0023 14 8 0.7128 -7.4894 -0.0025 15 6 2.8287 -8.5262 -0.0021 16 1 3.7584 -8.4045 -0.5579 17 6 2.8710 -9.3832 1.2647 18 1 2.2936 -9.0752 2.1365 19 6 4.1299 -10.2853 1.4689 20 6 3.7761 -11.6038 0.7371 21 6 3.0154 -11.1053 -0.5167 22 6 2.1817 -9.9127 -0.0041 23 1 1.0967 -9.9950 -0.0672 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 4.2910 -10.4698 2.5310 32 1 5.0131 -9.8272 1.0239 33 1 3.1324 -12.2286 1.3565 34 1 4.6784 -12.1447 0.4520 35 1 2.3633 -11.8883 -0.9036 36 1 3.7157 -10.7789 -1.2854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776695493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:31 Heat of formation + Delta-G solvation = -87.012189 kcal Electronic energy + Delta-G solvation = -16133.380212 eV Core-core repulsion = 13389.404550 eV Total energy + Delta-G solvation = -2743.975662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69453 -39.05809 -36.34266 -33.97801 -32.19811 -31.61732 -28.48309 -27.30514 -24.95375 -22.94392 -21.17162 -20.44528 -20.13262 -19.90792 -17.67383 -16.81236 -16.23877 -16.11620 -15.20644 -14.88203 -14.46774 -14.01059 -13.46155 -13.32508 -13.00010 -12.21583 -12.15190 -11.91902 -11.68430 -11.62211 -11.46128 -11.19428 -10.96744 -10.66431 -10.63558 -10.44234 -10.37071 -10.33753 -10.06509 -9.71343 -9.48754 -9.15910 -8.38499 -6.03260 -4.06337 2.16641 2.77201 3.31331 3.37379 3.40986 3.42664 4.26232 4.35967 4.39403 4.44434 4.81149 4.87189 5.01093 5.05976 5.12348 5.26515 5.32681 5.39459 5.52089 5.58604 5.63597 5.68716 5.74086 5.79080 5.94221 6.02237 6.05683 6.51731 6.54765 6.85446 6.99254 7.60606 7.71641 7.94690 7.96829 8.36322 8.99949 9.57955 11.08235 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066987 B = 0.003411 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.890291 B = 8207.611431 C = 8445.588047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.353 6.353 13 C 0.487 3.513 14 O -0.512 6.512 15 C -0.141 4.141 16 H 0.132 0.868 17 C -0.134 4.134 18 H 0.120 0.880 19 C -0.095 4.095 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.133 4.133 23 H 0.123 0.877 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -22.081 1.076 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.269 6.269 13 C 0.331 3.669 14 O -0.401 6.401 15 C -0.160 4.160 16 H 0.149 0.851 17 C -0.153 4.153 18 H 0.138 0.862 19 C -0.133 4.133 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.151 4.151 23 H 0.141 0.859 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.177 -21.965 1.083 23.133 hybrid contribution 0.145 1.182 -0.053 1.192 sum 7.322 -20.782 1.030 22.059 Atomic orbital electron populations 1.69973 1.06095 1.26758 1.50571 1.25035 0.94887 0.99381 0.95198 0.86537 0.79806 0.83196 0.78137 1.20608 1.21188 1.19795 1.21177 0.93138 0.90681 1.50973 0.92409 1.19055 0.93842 0.90749 0.97685 1.21766 0.99931 0.90953 1.01994 1.23524 0.91229 0.83599 1.02148 1.86485 1.42588 1.14955 1.82899 1.22426 0.87545 0.84453 0.72526 1.90647 1.16830 1.86911 1.45713 1.21899 1.01016 0.88280 1.04776 0.85066 1.23751 1.00081 0.99719 0.91703 0.86219 1.22351 0.95693 0.94048 1.01167 1.22682 1.00060 0.97078 0.96289 1.22014 0.98067 0.95621 0.97678 1.23343 1.00219 0.90679 1.00856 0.85896 0.92890 0.96230 0.96227 0.92120 0.92120 0.91526 0.91495 0.90740 0.90732 0.91073 0.90968 0.90680 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.32 5.53 -26.73 -0.15 -2.46 16 11 C 0.07 1.30 5.47 37.16 0.20 1.51 16 12 O -0.35 -6.23 10.22 -39.27 -0.40 -6.63 16 13 C 0.49 7.86 7.74 36.00 0.28 8.14 16 14 O -0.51 -9.56 16.07 -18.75 -0.30 -9.86 16 15 C -0.14 -1.65 5.82 -91.77 -0.53 -2.19 16 16 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.13 -1.33 6.81 -88.47 -0.60 -1.93 16 18 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.10 -0.69 6.66 -24.01 -0.16 -0.85 16 20 C -0.12 -0.77 6.91 -24.74 -0.17 -0.95 16 21 C -0.10 -0.70 6.63 -25.07 -0.17 -0.87 16 22 C -0.13 -1.34 6.34 -89.54 -0.57 -1.90 16 23 H 0.12 1.38 7.78 -51.93 -0.40 0.98 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -31.50 305.68 -8.66 -40.16 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.86 Total: -3.96 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.42 Total: -14.67 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.70 Total: -16.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.50 -8.66 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776695493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.856 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds