Wall clock time and date at job start Sun Mar 29 2020 22:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.34233 * 117.00244 * 179.97438 * 12 11 10 14 14 O 1.20825 * 119.99777 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99799 * 180.02562 * 13 12 11 16 16 H 1.08998 * 115.52776 * 325.58301 * 15 13 12 17 17 C 1.53006 * 117.45929 * 111.08625 * 15 13 12 18 18 H 1.09003 * 119.29610 * 356.28671 * 17 15 13 19 19 C 1.56218 * 116.99815 * 200.70337 * 17 15 13 20 20 C 1.54890 * 104.22652 * 272.14294 * 19 17 15 21 21 C 1.54893 * 102.74905 * 38.32816 * 20 19 17 22 22 C 1.53000 * 117.45476 * 180.08626 * 15 13 12 23 23 H 1.09000 * 119.30417 * 3.71234 * 22 15 13 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 30 30 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 31 31 H 1.08999 * 110.13629 * 153.61419 * 19 17 15 32 32 H 1.09000 * 110.91080 * 31.05064 * 19 17 15 33 33 H 1.09001 * 110.75165 * 280.01521 * 20 19 17 34 34 H 1.08996 * 110.91156 * 156.72159 * 20 19 17 35 35 H 1.08996 * 110.48713 * 203.37804 * 21 20 19 36 36 H 1.08997 * 110.59320 * 80.79030 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 8 2.4237 -6.0907 -0.0024 13 6 1.9106 -7.3311 -0.0023 14 8 0.7128 -7.4894 -0.0025 15 6 2.8287 -8.5262 -0.0021 16 1 3.7584 -8.4045 -0.5579 17 6 2.8710 -9.3832 1.2647 18 1 2.2936 -9.0752 2.1365 19 6 4.1299 -10.2853 1.4689 20 6 3.7761 -11.6038 0.7371 21 6 3.0154 -11.1053 -0.5167 22 6 2.1817 -9.9127 -0.0041 23 1 1.0967 -9.9950 -0.0672 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 0.8532 -5.0450 0.8876 30 1 0.8540 -5.0446 -0.8922 31 1 4.2910 -10.4698 2.5310 32 1 5.0131 -9.8272 1.0239 33 1 3.1324 -12.2286 1.3565 34 1 4.6784 -12.1447 0.4520 35 1 2.3633 -11.8883 -0.9036 36 1 3.7157 -10.7789 -1.2854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776695493.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:30 Heat of formation + Delta-G solvation = -103.323671 kcal Electronic energy + Delta-G solvation = -16134.087531 eV Core-core repulsion = 13389.404550 eV Total energy + Delta-G solvation = -2744.682981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87166 -40.03537 -37.78319 -35.96647 -33.74659 -32.80650 -29.19319 -29.07270 -26.33191 -24.63754 -22.21793 -21.94467 -21.17397 -20.71859 -18.95252 -18.56988 -17.73826 -17.67250 -16.51057 -15.95210 -15.85570 -15.51086 -14.65437 -14.10906 -14.10340 -14.00184 -13.84286 -13.67574 -12.84462 -12.59771 -12.53711 -12.37365 -12.33184 -12.12560 -11.99449 -11.78152 -11.70783 -11.47827 -11.43331 -11.25863 -11.21147 -10.79786 -10.59125 -8.23435 -6.35419 0.92881 1.40449 1.42514 1.50131 1.54818 2.40337 2.56028 3.10409 3.39693 3.57727 3.64237 3.90420 3.94471 4.00773 4.10356 4.20770 4.35461 4.44857 4.47151 4.64665 4.75115 4.79842 4.82201 4.98501 5.03748 5.13393 5.21387 5.22625 5.23241 5.36461 5.47431 5.50809 5.60173 5.77641 6.16737 6.61807 6.80389 7.34319 8.88935 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066987 B = 0.003411 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.890291 B = 8207.611431 C = 8445.588047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.354 6.354 13 C 0.484 3.516 14 O -0.544 6.544 15 C -0.153 4.153 16 H 0.152 0.848 17 C -0.130 4.130 18 H 0.110 0.890 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.093 4.093 22 C -0.132 4.132 23 H 0.105 0.895 24 H 0.265 0.735 25 H -0.004 1.004 26 H -0.003 1.003 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -23.104 1.125 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.003 3.997 12 O -0.270 6.270 13 C 0.329 3.671 14 O -0.434 6.434 15 C -0.172 4.172 16 H 0.169 0.831 17 C -0.149 4.149 18 H 0.128 0.872 19 C -0.128 4.128 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.150 4.150 23 H 0.123 0.877 24 H 0.074 0.926 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.480 -23.012 1.133 24.913 hybrid contribution -0.622 1.438 -0.059 1.568 sum 8.857 -21.574 1.074 23.346 Atomic orbital electron populations 1.70109 1.07932 1.27986 1.51414 1.26035 0.95811 1.03610 0.94514 0.85360 0.78643 0.77960 0.78574 1.19666 1.20763 1.18471 1.21624 0.93784 0.91824 1.50980 0.91600 1.18936 0.94245 0.92495 0.95445 1.21463 0.98748 0.90244 1.02626 1.23168 0.91009 0.83743 1.01751 1.86476 1.41984 1.15359 1.83200 1.23360 0.87961 0.84663 0.71121 1.90630 1.18463 1.87105 1.47249 1.22038 1.01090 0.86904 1.07119 0.83069 1.23938 1.01458 0.98701 0.90781 0.87239 1.22419 0.94390 0.93786 1.02230 1.22689 1.00773 0.96603 0.95465 1.22076 0.98045 0.94427 0.98454 1.23464 0.99772 0.90583 1.01181 0.87702 0.92637 0.98515 0.98509 0.91370 0.91422 0.92010 0.91961 0.89646 0.89891 0.90728 0.89000 0.89723 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.99 5.53 30.59 0.17 -3.82 16 11 C 0.08 3.00 5.47 71.98 0.39 3.40 16 12 O -0.35 -12.45 10.22 -51.45 -0.53 -12.97 16 13 C 0.48 15.66 7.74 71.24 0.55 16.21 16 14 O -0.54 -20.83 16.07 21.97 0.35 -20.48 16 15 C -0.15 -3.43 5.82 -11.54 -0.07 -3.50 16 16 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 17 C -0.13 -2.40 6.81 -9.40 -0.06 -2.47 16 18 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 19 C -0.09 -1.06 6.66 32.36 0.22 -0.84 16 20 C -0.12 -1.09 6.91 31.89 0.22 -0.87 16 21 C -0.09 -1.11 6.63 31.67 0.21 -0.90 16 22 C -0.13 -2.50 6.34 -10.09 -0.06 -2.57 16 23 H 0.10 2.38 7.78 -2.39 -0.02 2.36 16 24 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 30 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.14 305.68 5.58 -62.55 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.04 Total: 6.16 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 2.41 Total: -24.43 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.17 Total: -33.45 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.14 5.58 -62.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776695493.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.770 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds