Wall clock time and date at job start Sun Mar 29 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00282 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00343 * 3 2 1 5 5 H 1.48496 * 109.47193 * 30.00279 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00321 * 3 2 1 7 7 C 1.37878 * 119.99385 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00250 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00645 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99730 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00576 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00407 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47333 * 224.18774 * 14 13 11 16 16 C 1.52997 * 117.50252 * 106.97384 * 15 14 13 17 17 C 1.52997 * 117.50043 * 175.64004 * 15 14 13 18 18 C 1.53003 * 109.47410 * 104.18141 * 14 13 11 19 19 C 1.53005 * 117.49529 * 8.74872 * 18 14 13 20 20 C 1.52999 * 117.49799 * 300.09023 * 18 14 13 21 21 H 0.97005 * 119.99532 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47636 * 59.99901 * 9 7 2 23 23 H 1.09003 * 109.47245 * 299.99800 * 9 7 2 24 24 H 0.97001 * 120.00065 * 359.97438 * 10 9 7 25 25 H 0.97001 * 120.00133 * 359.97438 * 13 11 10 26 26 H 1.09009 * 109.46840 * 344.18334 * 14 13 11 27 27 H 1.08997 * 115.54289 * 321.30476 * 15 14 13 28 28 H 1.08992 * 117.49753 * 215.00483 * 16 15 14 29 29 H 1.09000 * 117.49373 * 0.02817 * 16 15 14 30 30 H 1.09007 * 117.49886 * 359.96906 * 17 15 14 31 31 H 1.08997 * 117.50012 * 144.97286 * 17 15 14 32 32 H 1.08993 * 115.54847 * 154.42252 * 18 14 13 33 33 H 1.08992 * 117.49875 * 0.02562 * 19 18 14 34 34 H 1.09005 * 117.49044 * 145.01805 * 19 18 14 35 35 H 1.08999 * 117.50132 * 214.97651 * 20 18 14 36 36 H 1.09001 * 117.49844 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5581 -5.1056 0.0009 13 7 2.6293 -5.9078 -0.0005 14 6 2.1409 -7.2891 -0.0005 15 6 2.9465 -8.1149 1.0044 16 6 2.2521 -8.5154 2.3076 17 6 2.5203 -9.5672 1.2282 18 6 2.3035 -7.8876 -1.3992 19 6 3.0919 -7.0747 -2.4281 20 6 1.5712 -7.1981 -2.5521 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 3.1565 -3.4356 -0.0009 25 1 3.5829 -5.7307 -0.0017 26 1 1.0876 -7.3020 0.2800 27 1 4.0121 -7.8903 1.0503 28 1 2.8609 -8.5543 3.2108 29 1 1.2211 -8.1909 2.4488 30 1 1.6656 -9.9342 0.6598 31 1 3.3056 -10.2981 1.4211 32 1 2.3946 -8.9730 -1.4384 33 1 3.4951 -6.1139 -2.1084 34 1 3.7015 -7.6256 -3.1444 35 1 1.1810 -7.8298 -3.3501 36 1 0.9733 -6.3183 -2.3141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787355950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:46 Heat of formation + Delta-G solvation = 12.284353 kcal Electronic energy + Delta-G solvation = -16899.092622 eV Core-core repulsion = 14191.715532 eV Total energy + Delta-G solvation = -2707.377090 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81866 -37.84195 -36.20479 -34.10008 -33.18491 -32.15077 -27.96101 -26.31883 -22.78636 -22.44045 -22.29795 -21.43363 -20.09247 -19.63911 -17.99137 -16.60246 -16.07458 -15.73701 -14.92125 -14.62994 -14.32860 -14.09701 -13.81965 -13.04346 -12.94733 -11.97174 -11.94105 -11.81746 -11.60426 -11.58453 -11.33663 -10.94187 -10.87182 -10.55576 -10.42065 -10.28370 -9.91920 -9.84638 -9.34588 -9.31316 -8.72950 -8.64566 -7.73461 -6.13254 -4.19619 3.26167 3.28402 3.33131 3.36965 3.72569 3.96245 4.04676 4.35063 4.56719 4.82812 4.91904 5.03375 5.10688 5.15608 5.18940 5.22915 5.44048 5.55850 5.60393 5.77936 5.81246 5.87433 6.04753 6.06844 6.20199 6.28751 6.42103 6.97537 7.16828 7.55096 7.58595 7.60109 7.94634 8.07920 8.79404 8.98378 9.37063 9.51470 10.97033 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035729 B = 0.005007 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.487712 B = 5591.350797 C = 5876.002196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.694 3.306 12 O -0.601 6.601 13 N -0.747 5.747 14 C 0.220 3.780 15 C -0.156 4.156 16 C -0.176 4.176 17 C -0.174 4.174 18 C -0.165 4.165 19 C -0.175 4.175 20 C -0.174 4.174 21 H 0.265 0.735 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.385 0.615 25 H 0.391 0.609 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -16.397 -0.359 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.394 3.606 12 O -0.480 6.480 13 N -0.403 5.403 14 C 0.113 3.887 15 C -0.175 4.175 16 C -0.213 4.213 17 C -0.211 4.211 18 C -0.185 4.185 19 C -0.212 4.212 20 C -0.211 4.211 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.217 0.783 25 H 0.224 0.776 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.935 -16.398 -0.347 17.808 hybrid contribution 1.386 1.083 -0.033 1.759 sum 8.321 -15.315 -0.380 17.434 Atomic orbital electron populations 1.69986 1.06086 1.27220 1.49024 1.24941 0.94902 0.99373 0.94794 0.86418 0.79601 0.82708 0.78181 1.20495 1.21026 1.19797 1.21229 0.93244 0.90478 1.53015 0.91998 1.18959 0.87772 0.81084 0.97537 1.45717 1.10720 1.04468 1.77260 1.16153 0.85275 0.81071 0.78108 1.90862 1.14215 1.84104 1.58837 1.45162 1.08697 1.04788 1.81615 1.19730 0.98901 0.79169 0.90878 1.22485 0.99797 0.96897 0.98357 1.23036 1.02111 1.03299 0.92862 1.22918 1.03480 0.91530 1.03203 1.22780 1.06268 0.98221 0.91208 1.22901 0.94573 1.02029 1.01687 1.22962 0.94872 1.03488 0.99799 0.92493 0.95800 0.95813 0.78252 0.77602 0.88116 0.87729 0.88924 0.88486 0.88598 0.88860 0.87489 0.88574 0.89516 0.89347 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.23 5.43 -5.20 -0.03 7.21 16 10 N -0.73 -15.72 5.55 -66.42 -0.37 -16.09 16 11 C 0.69 14.28 8.28 -86.93 -0.72 13.56 16 12 O -0.60 -14.93 15.44 5.28 0.08 -14.85 16 13 N -0.75 -11.21 3.37 -58.67 -0.20 -11.40 16 14 C 0.22 2.96 2.80 -67.93 -0.19 2.77 16 15 C -0.16 -1.68 5.38 -90.62 -0.49 -2.16 16 16 C -0.18 -1.86 10.18 -26.69 -0.27 -2.13 16 17 C -0.17 -1.57 9.67 -26.69 -0.26 -1.83 16 18 C -0.17 -2.00 5.62 -90.62 -0.51 -2.51 16 19 C -0.17 -2.12 9.85 -26.69 -0.26 -2.38 16 20 C -0.17 -2.41 10.17 -26.69 -0.27 -2.68 16 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.39 7.13 8.34 -40.82 -0.34 6.79 16 25 H 0.39 4.82 8.43 -40.82 -0.34 4.47 16 26 H 0.10 1.66 6.85 -51.92 -0.36 1.30 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.11 7.68 -51.93 -0.40 0.71 16 33 H 0.10 1.25 6.72 -51.93 -0.35 0.90 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 1.78 7.55 -51.93 -0.39 1.39 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -31.87 305.30 -9.10 -40.97 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.51 Total: 10.05 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.42 Total: -3.65 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.17 Total: -53.12 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.87 -9.10 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.256 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds