Wall clock time and date at job start Sun Mar 29 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00282 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00343 * 3 2 1 5 5 H 1.48496 * 109.47193 * 30.00279 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00321 * 3 2 1 7 7 C 1.37878 * 119.99385 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00250 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00645 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99730 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00576 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00407 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47333 * 224.18774 * 14 13 11 16 16 C 1.52997 * 117.50252 * 106.97384 * 15 14 13 17 17 C 1.52997 * 117.50043 * 175.64004 * 15 14 13 18 18 C 1.53003 * 109.47410 * 104.18141 * 14 13 11 19 19 C 1.53005 * 117.49529 * 8.74872 * 18 14 13 20 20 C 1.52999 * 117.49799 * 300.09023 * 18 14 13 21 21 H 0.97005 * 119.99532 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47636 * 59.99901 * 9 7 2 23 23 H 1.09003 * 109.47245 * 299.99800 * 9 7 2 24 24 H 0.97001 * 120.00065 * 359.97438 * 10 9 7 25 25 H 0.97001 * 120.00133 * 359.97438 * 13 11 10 26 26 H 1.09009 * 109.46840 * 344.18334 * 14 13 11 27 27 H 1.08997 * 115.54289 * 321.30476 * 15 14 13 28 28 H 1.08992 * 117.49753 * 215.00483 * 16 15 14 29 29 H 1.09000 * 117.49373 * 0.02817 * 16 15 14 30 30 H 1.09007 * 117.49886 * 359.96906 * 17 15 14 31 31 H 1.08997 * 117.50012 * 144.97286 * 17 15 14 32 32 H 1.08993 * 115.54847 * 154.42252 * 18 14 13 33 33 H 1.08992 * 117.49875 * 0.02562 * 19 18 14 34 34 H 1.09005 * 117.49044 * 145.01805 * 19 18 14 35 35 H 1.08999 * 117.50132 * 214.97651 * 20 18 14 36 36 H 1.09001 * 117.49844 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5581 -5.1056 0.0009 13 7 2.6293 -5.9078 -0.0005 14 6 2.1409 -7.2891 -0.0005 15 6 2.9465 -8.1149 1.0044 16 6 2.2521 -8.5154 2.3076 17 6 2.5203 -9.5672 1.2282 18 6 2.3035 -7.8876 -1.3992 19 6 3.0919 -7.0747 -2.4281 20 6 1.5712 -7.1981 -2.5521 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 3.1565 -3.4356 -0.0009 25 1 3.5829 -5.7307 -0.0017 26 1 1.0876 -7.3020 0.2800 27 1 4.0121 -7.8903 1.0503 28 1 2.8609 -8.5543 3.2108 29 1 1.2211 -8.1909 2.4488 30 1 1.6656 -9.9342 0.6598 31 1 3.3056 -10.2981 1.4211 32 1 2.3946 -8.9730 -1.4384 33 1 3.4951 -6.1139 -2.1084 34 1 3.7015 -7.6256 -3.1444 35 1 1.1810 -7.8298 -3.3501 36 1 0.9733 -6.3183 -2.3141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787355950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:46 Heat of formation + Delta-G solvation = -8.979127 kcal Electronic energy + Delta-G solvation = -16900.014676 eV Core-core repulsion = 14191.715532 eV Total energy + Delta-G solvation = -2708.299144 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26970 -39.15843 -37.14240 -36.10079 -34.74736 -34.07761 -29.67945 -27.90955 -24.66396 -23.42505 -23.35383 -22.41035 -21.75507 -20.76674 -19.72066 -18.01849 -17.71845 -17.20045 -16.61105 -16.01381 -15.72979 -15.56904 -15.08544 -14.66857 -14.28807 -14.02219 -13.86936 -13.03272 -12.84570 -12.71175 -12.63927 -12.38159 -12.34644 -12.21931 -11.56868 -11.47608 -11.31331 -11.14315 -10.86833 -10.81665 -10.79934 -10.19317 -9.59159 -8.28308 -6.44925 1.43333 1.46370 1.57320 1.86633 2.26483 2.39608 2.83758 2.99021 3.06761 3.55706 3.62498 3.93003 4.06897 4.12739 4.16213 4.17733 4.49635 4.57842 4.71612 4.80000 4.83680 5.03575 5.07487 5.08675 5.21526 5.26745 5.28372 5.30549 5.31943 5.49881 5.64522 5.71406 5.85670 6.28581 6.67071 7.24704 7.33584 7.75497 8.84203 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035729 B = 0.005007 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.487712 B = 5591.350797 C = 5876.002196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.287 3.713 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.648 6.648 13 N -0.722 5.722 14 C 0.215 3.785 15 C -0.160 4.160 16 C -0.192 4.192 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.161 4.161 20 C -0.199 4.199 21 H 0.269 0.731 22 H -0.017 1.017 23 H -0.017 1.017 24 H 0.404 0.596 25 H 0.409 0.591 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 -17.406 -0.491 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.164 3.836 10 N -0.378 5.378 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.378 5.378 14 C 0.110 3.890 15 C -0.179 4.179 16 C -0.229 4.229 17 C -0.187 4.187 18 C -0.170 4.170 19 C -0.198 4.198 20 C -0.236 4.236 21 H 0.077 0.923 22 H 0.001 0.999 23 H 0.001 0.999 24 H 0.239 0.761 25 H 0.246 0.754 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.312 -17.465 -0.479 20.288 hybrid contribution 0.296 1.307 0.010 1.340 sum 10.608 -16.159 -0.470 19.335 Atomic orbital electron populations 1.70155 1.08325 1.28555 1.49989 1.26076 0.95770 1.03900 0.93830 0.85129 0.78457 0.76844 0.78596 1.19581 1.20931 1.17892 1.21597 0.94289 0.90461 1.52890 0.89840 1.18370 0.88080 0.83427 0.93731 1.45293 1.10795 1.03874 1.77797 1.16290 0.85180 0.81579 0.77598 1.90832 1.16767 1.84797 1.60703 1.44929 1.08840 1.04290 1.79737 1.19862 0.97602 0.78455 0.93099 1.22404 1.00098 0.97941 0.97430 1.23073 1.01183 1.04837 0.93767 1.23029 1.03865 0.90731 1.01105 1.22814 1.05106 0.99584 0.89520 1.22976 0.93225 1.01815 1.01741 1.22886 0.95999 1.02786 1.01944 0.92252 0.99903 0.99883 0.76120 0.75424 0.91772 0.85736 0.87550 0.90765 0.88467 0.86237 0.84490 0.89605 0.86604 0.87494 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.55 -30.74 9.28 25.60 0.24 -30.51 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.34 5.43 85.63 0.46 16.81 16 10 N -0.72 -32.09 5.55 -482.31 -2.68 -34.77 16 11 C 0.69 29.69 8.28 179.06 1.48 31.17 16 12 O -0.65 -34.45 15.44 -4.01 -0.06 -34.51 16 13 N -0.72 -21.50 3.37 -457.80 -1.54 -23.04 16 14 C 0.22 5.68 2.80 44.99 0.13 5.81 16 15 C -0.16 -3.05 5.38 -10.80 -0.06 -3.11 16 16 C -0.19 -3.78 10.18 30.62 0.31 -3.46 16 17 C -0.15 -2.25 9.67 30.62 0.30 -1.95 16 18 C -0.15 -3.38 5.62 -10.79 -0.06 -3.44 16 19 C -0.16 -3.54 9.85 30.62 0.30 -3.24 16 20 C -0.20 -5.51 10.17 30.62 0.31 -5.19 16 21 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 23 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 24 H 0.40 14.74 8.34 -92.71 -0.77 13.96 16 25 H 0.41 9.35 8.43 -92.71 -0.78 8.57 16 26 H 0.06 2.22 6.85 -2.38 -0.02 2.20 16 27 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 30 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.14 2.32 7.68 -2.39 -0.02 2.30 16 33 H 0.09 2.07 6.72 -2.39 -0.02 2.06 16 34 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.05 2.03 7.55 -2.39 -0.02 2.01 16 Total: -1.00 -73.72 305.30 1.44 -72.28 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.47 Total: 28.55 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 3.88 Total: 3.56 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -3.93 Total: -114.66 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.06 Total: -34.51 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.72 1.44 -72.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787355950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.301 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds