Wall clock time and date at job start Sun Mar 29 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33085 * 119.99965 * 2 1 4 4 C 1.50698 * 119.99876 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.47370 * 265.40845 * 4 3 2 6 6 C 1.46949 * 120.00104 * 180.02562 * 3 2 1 7 7 O 1.21537 * 119.99815 * 5.09289 * 6 3 2 8 8 O 1.34796 * 119.99976 * 185.09189 * 6 3 2 9 9 C 1.45205 * 117.00037 * 185.06307 * 8 6 3 10 10 C 1.52998 * 109.47039 * 184.88052 * 9 8 6 11 11 C 1.50692 * 115.55359 * 54.57583 * 10 9 8 12 12 H 1.08004 * 120.00623 * 215.54071 * 11 10 9 13 13 C 1.37886 * 119.99857 * 35.26131 * 11 10 9 14 14 N 1.31513 * 119.99671 * 356.20472 * 13 11 10 15 15 Si 1.86796 * 119.99874 * 176.20019 * 13 11 10 16 16 H 1.48500 * 109.47218 * 60.00606 * 15 13 11 17 17 H 1.48500 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47607 * 299.99958 * 15 13 11 19 19 C 1.53000 * 117.49675 * 200.24812 * 10 9 8 20 20 C 1.52999 * 117.49694 * 268.90719 * 10 9 8 21 21 H 1.08998 * 109.47411 * 299.99708 * 1 2 3 22 22 H 1.09000 * 109.47253 * 60.00512 * 1 2 3 23 23 H 1.09003 * 109.46717 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.00277 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46935 * 25.40996 * 4 3 2 26 26 H 1.09007 * 109.46796 * 145.40226 * 4 3 2 27 27 H 1.08996 * 109.46950 * 299.99541 * 5 4 3 28 28 H 1.08999 * 109.47477 * 60.00215 * 5 4 3 29 29 H 1.09005 * 109.46988 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46942 * 64.87713 * 9 8 6 31 31 H 1.08995 * 109.46726 * 304.87706 * 9 8 6 32 32 H 0.97003 * 119.99921 * 184.99174 * 14 13 11 33 33 H 1.08998 * 117.49734 * 215.00008 * 19 10 9 34 34 H 1.09003 * 117.49874 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50127 * 359.97438 * 20 10 9 36 36 H 1.08997 * 117.50238 * 144.97482 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4189 2.4576 -0.0006 5 6 1.2644 2.9567 -1.4385 6 6 3.6419 1.1526 -0.0006 7 8 4.2495 0.1042 -0.0945 8 8 4.3159 2.3153 0.1030 9 6 5.7615 2.2524 -0.0178 10 6 6.3561 3.6372 0.2460 11 6 5.9646 4.2743 1.5543 12 1 5.8170 5.3426 1.6120 13 6 5.7891 3.4925 2.6765 14 7 5.8901 2.1842 2.5888 15 14 5.4081 4.2918 4.3212 16 1 4.1410 5.0592 4.2170 17 1 5.2669 3.2412 5.3612 18 1 6.5140 5.2104 4.6933 19 6 7.7665 3.9122 -0.2795 20 6 6.5568 4.5607 -0.9573 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0470 -0.9353 0.0004 25 1 0.4332 2.3082 0.4400 26 1 1.9696 3.1954 0.5830 27 1 2.2501 3.1062 -1.8791 28 1 0.7136 2.2190 -2.0221 29 1 0.7197 3.9010 -1.4389 30 1 6.0282 1.9280 -1.0236 31 1 6.1562 1.5430 0.7095 32 1 5.6957 1.6299 3.3608 33 1 8.4111 4.5539 0.3211 34 1 8.2705 3.1066 -0.8136 35 1 6.2656 4.1815 -1.9368 36 1 6.4052 5.6289 -0.8027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789384658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:41 Heat of formation + Delta-G solvation = -57.536837 kcal Electronic energy + Delta-G solvation = -17496.601052 eV Core-core repulsion = 14753.903537 eV Total energy + Delta-G solvation = -2742.697515 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39177 -36.90490 -35.84468 -34.79927 -32.15080 -31.10296 -28.00286 -26.21480 -25.29232 -22.97980 -21.70074 -21.16899 -19.11810 -17.87075 -16.62096 -16.53449 -15.63317 -15.24919 -14.57328 -14.17440 -13.71213 -13.58377 -13.05544 -12.98827 -12.57601 -12.26130 -11.95609 -11.85223 -11.69002 -11.48517 -10.98172 -10.80737 -10.71270 -10.58529 -10.48859 -10.31066 -9.85389 -9.44257 -9.21074 -8.96091 -8.83048 -8.72474 -8.21453 -5.94776 -4.09041 1.64160 3.29390 3.34928 3.36835 3.70209 3.77721 4.37685 4.97283 5.05914 5.22250 5.33497 5.37380 5.53114 5.54361 5.69436 5.79756 5.81427 5.98729 6.07863 6.19156 6.25183 6.32026 6.47857 6.52497 6.61053 6.65818 6.69922 6.82427 6.92682 7.03657 7.25895 7.52104 7.71066 7.95460 8.35835 8.79541 8.91452 9.52816 10.99336 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.008713 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.085679 B = 3212.989966 C = 3711.810811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.142 4.142 6 C 0.494 3.506 7 O -0.530 6.530 8 O -0.313 6.313 9 C 0.118 3.882 10 C 0.047 3.953 11 C -0.480 4.480 12 H 0.061 0.939 13 C 0.073 3.927 14 N -0.882 5.882 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.197 4.197 20 C -0.209 4.209 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.119 0.881 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -1.335 -5.036 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.111 4.111 3 C -0.144 4.144 4 C -0.124 4.124 5 C -0.199 4.199 6 C 0.340 3.660 7 O -0.423 6.423 8 O -0.227 6.227 9 C 0.044 3.956 10 C 0.046 3.954 11 C -0.518 4.518 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.519 5.519 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.235 4.235 20 C -0.246 4.246 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.137 0.863 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.128 -1.759 -4.902 10.509 hybrid contribution 0.066 0.261 0.834 0.877 sum -9.061 -1.497 -4.068 10.045 Atomic orbital electron populations 1.20929 0.92078 1.02550 1.02568 1.23514 0.96161 0.97663 0.93742 1.20942 0.90620 0.96795 1.06083 1.20536 0.99288 0.94377 0.98218 1.21656 1.02147 1.00249 0.95871 1.21134 0.88884 0.82811 0.73185 1.90744 1.70605 1.33506 1.47488 1.86526 1.23851 1.31878 1.80463 1.22837 0.74843 0.99990 0.97898 1.18927 0.92864 0.91147 0.92444 1.20404 1.46740 0.93482 0.91138 0.92063 1.24969 0.94214 0.94807 0.99012 1.69757 1.48212 1.03471 1.30509 0.86563 0.78906 0.78918 0.83077 1.20121 1.21241 1.20178 1.22988 0.92668 1.02846 1.04978 1.22938 1.05277 0.98996 0.97399 0.90751 0.90898 0.91694 0.85774 0.91190 0.89404 0.92180 0.93308 0.92459 0.96448 0.86321 0.92694 0.89837 0.91463 0.91332 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.85 36.00 0.32 -0.98 16 2 C -0.09 -1.36 9.84 -36.10 -0.36 -1.72 16 3 C -0.14 -2.53 5.25 -102.89 -0.54 -3.07 16 4 C -0.09 -1.32 5.49 -27.89 -0.15 -1.47 16 5 C -0.14 -1.90 9.89 37.15 0.37 -1.53 16 6 C 0.49 11.22 7.86 34.26 0.27 11.49 16 7 O -0.53 -13.18 15.93 -19.29 -0.31 -13.49 16 8 O -0.31 -7.74 9.09 -40.75 -0.37 -8.11 16 9 C 0.12 3.00 4.45 37.16 0.17 3.17 16 10 C 0.05 1.18 2.20 -155.67 -0.34 0.84 16 11 C -0.48 -13.12 8.80 -34.44 -0.30 -13.42 16 12 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 13 C 0.07 1.98 5.36 -17.82 -0.10 1.88 16 14 N -0.88 -24.89 10.18 55.43 0.56 -24.33 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.20 -4.44 9.96 -26.69 -0.27 -4.70 16 20 C -0.21 -4.59 9.93 -26.69 -0.26 -4.85 16 21 H 0.07 0.73 7.41 -51.93 -0.39 0.34 16 22 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.12 1.92 7.50 -52.49 -0.39 1.53 16 25 H 0.07 0.87 6.33 -51.93 -0.33 0.54 16 26 H 0.09 1.55 7.75 -51.93 -0.40 1.15 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.57 7.81 -51.93 -0.41 0.16 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.12 3.36 5.74 -51.93 -0.30 3.06 16 32 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 33 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -29.99 305.48 -7.27 -37.26 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.54 Total: 2.31 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.20 Total: -14.37 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.56 Total: -24.33 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.68 Total: -21.60 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.99 -7.27 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789384658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.277 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds