Wall clock time and date at job start Sun Mar 29 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33085 * 119.99965 * 2 1 4 4 C 1.50698 * 119.99876 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.47370 * 265.40845 * 4 3 2 6 6 C 1.46949 * 120.00104 * 180.02562 * 3 2 1 7 7 O 1.21537 * 119.99815 * 5.09289 * 6 3 2 8 8 O 1.34796 * 119.99976 * 185.09189 * 6 3 2 9 9 C 1.45205 * 117.00037 * 185.06307 * 8 6 3 10 10 C 1.52998 * 109.47039 * 184.88052 * 9 8 6 11 11 C 1.50692 * 115.55359 * 54.57583 * 10 9 8 12 12 H 1.08004 * 120.00623 * 215.54071 * 11 10 9 13 13 C 1.37886 * 119.99857 * 35.26131 * 11 10 9 14 14 N 1.31513 * 119.99671 * 356.20472 * 13 11 10 15 15 Si 1.86796 * 119.99874 * 176.20019 * 13 11 10 16 16 H 1.48500 * 109.47218 * 60.00606 * 15 13 11 17 17 H 1.48500 * 109.46824 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47607 * 299.99958 * 15 13 11 19 19 C 1.53000 * 117.49675 * 200.24812 * 10 9 8 20 20 C 1.52999 * 117.49694 * 268.90719 * 10 9 8 21 21 H 1.08998 * 109.47411 * 299.99708 * 1 2 3 22 22 H 1.09000 * 109.47253 * 60.00512 * 1 2 3 23 23 H 1.09003 * 109.46717 * 179.97438 * 1 2 3 24 24 H 1.08002 * 120.00277 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46935 * 25.40996 * 4 3 2 26 26 H 1.09007 * 109.46796 * 145.40226 * 4 3 2 27 27 H 1.08996 * 109.46950 * 299.99541 * 5 4 3 28 28 H 1.08999 * 109.47477 * 60.00215 * 5 4 3 29 29 H 1.09005 * 109.46988 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.46942 * 64.87713 * 9 8 6 31 31 H 1.08995 * 109.46726 * 304.87706 * 9 8 6 32 32 H 0.97003 * 119.99921 * 184.99174 * 14 13 11 33 33 H 1.08998 * 117.49734 * 215.00008 * 19 10 9 34 34 H 1.09003 * 117.49874 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50127 * 359.97438 * 20 10 9 36 36 H 1.08997 * 117.50238 * 144.97482 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1526 0.0000 4 6 1.4189 2.4576 -0.0006 5 6 1.2644 2.9567 -1.4385 6 6 3.6419 1.1526 -0.0006 7 8 4.2495 0.1042 -0.0945 8 8 4.3159 2.3153 0.1030 9 6 5.7615 2.2524 -0.0178 10 6 6.3561 3.6372 0.2460 11 6 5.9646 4.2743 1.5543 12 1 5.8170 5.3426 1.6120 13 6 5.7891 3.4925 2.6765 14 7 5.8901 2.1842 2.5888 15 14 5.4081 4.2918 4.3212 16 1 4.1410 5.0592 4.2170 17 1 5.2669 3.2412 5.3612 18 1 6.5140 5.2104 4.6933 19 6 7.7665 3.9122 -0.2795 20 6 6.5568 4.5607 -0.9573 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.0470 -0.9353 0.0004 25 1 0.4332 2.3082 0.4400 26 1 1.9696 3.1954 0.5830 27 1 2.2501 3.1062 -1.8791 28 1 0.7136 2.2190 -2.0221 29 1 0.7197 3.9010 -1.4389 30 1 6.0282 1.9280 -1.0236 31 1 6.1562 1.5430 0.7095 32 1 5.6957 1.6299 3.3608 33 1 8.4111 4.5539 0.3211 34 1 8.2705 3.1066 -0.8136 35 1 6.2656 4.1815 -1.9368 36 1 6.4052 5.6289 -0.8027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789384658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:40 Heat of formation + Delta-G solvation = -73.075667 kcal Electronic energy + Delta-G solvation = -17497.274867 eV Core-core repulsion = 14753.903537 eV Total energy + Delta-G solvation = -2743.371329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14794 -38.68952 -37.24571 -36.62875 -34.20546 -32.17173 -29.37480 -27.97653 -27.28658 -24.09792 -23.31839 -22.91929 -21.09236 -19.39052 -18.51293 -18.08435 -17.34747 -17.14749 -16.47679 -15.75393 -15.19607 -14.97897 -14.57223 -14.08287 -13.96324 -13.75108 -13.47015 -13.34541 -13.07106 -12.90454 -12.86934 -12.72335 -12.35427 -12.14507 -11.98815 -11.74898 -11.65118 -11.28970 -11.09318 -10.92705 -10.69395 -10.18356 -10.05225 -7.99594 -6.20834 0.25373 1.41604 1.42596 1.50608 2.06088 2.13480 2.41393 3.03234 3.55593 3.86598 3.89859 4.21487 4.23010 4.32459 4.39166 4.55025 4.57526 4.64813 4.75880 4.76346 4.86631 4.89085 4.97302 5.09855 5.14247 5.17120 5.22483 5.38159 5.44256 5.48414 5.50324 5.69038 5.83168 5.91109 6.31587 6.77129 7.05317 7.43123 8.91565 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.008713 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.085679 B = 3212.989966 C = 3711.810811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.184 4.184 4 C -0.078 4.078 5 C -0.138 4.138 6 C 0.484 3.516 7 O -0.567 6.567 8 O -0.326 6.326 9 C 0.126 3.874 10 C 0.004 3.996 11 C -0.496 4.496 12 H 0.058 0.942 13 C 0.026 3.974 14 N -0.907 5.907 15 Si 0.957 3.043 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.269 1.269 19 C -0.188 4.188 20 C -0.186 4.186 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.022 0.978 31 H 0.086 0.914 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.567 -0.830 -5.386 12.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.116 4.116 5 C -0.195 4.195 6 C 0.332 3.668 7 O -0.463 6.463 8 O -0.240 6.240 9 C 0.053 3.947 10 C 0.004 3.996 11 C -0.533 4.533 12 H 0.076 0.924 13 C -0.173 4.173 14 N -0.545 5.545 15 Si 0.782 3.218 16 H -0.194 1.194 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.226 4.226 20 C -0.223 4.223 21 H 0.108 0.892 22 H 0.113 0.887 23 H 0.106 0.894 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.299 -1.232 -5.263 12.525 hybrid contribution 0.711 0.012 0.891 1.140 sum -10.588 -1.220 -4.373 11.520 Atomic orbital electron populations 1.21089 0.87931 1.04766 1.04126 1.23945 0.98890 0.95964 0.88609 1.20999 0.87633 0.99196 1.10643 1.20510 0.99908 0.92104 0.99035 1.21650 1.01150 1.01878 0.94849 1.22186 0.91006 0.81749 0.71850 1.90702 1.71793 1.34242 1.49519 1.86533 1.23341 1.33226 1.80903 1.22553 0.75693 0.99588 0.96909 1.19079 0.95184 0.91894 0.93450 1.20662 1.46848 0.93427 0.92363 0.92374 1.25693 0.94313 0.95206 1.02128 1.69963 1.49245 1.04537 1.30762 0.85634 0.79035 0.78043 0.79100 1.19386 1.21324 1.19412 1.23002 0.91912 1.03098 1.04543 1.22954 1.03657 0.98879 0.96778 0.89185 0.88709 0.89397 0.87041 0.87747 0.92845 0.94980 0.91065 0.90567 0.96032 0.89630 0.93379 0.89650 0.90118 0.89622 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.85 71.23 0.63 -1.38 16 2 C -0.06 -1.53 9.84 24.53 0.24 -1.29 16 3 C -0.18 -6.41 5.25 -18.74 -0.10 -6.51 16 4 C -0.08 -2.28 5.49 29.85 0.16 -2.12 16 5 C -0.14 -3.45 9.89 71.98 0.71 -2.73 16 6 C 0.48 22.75 7.86 70.10 0.55 23.30 16 7 O -0.57 -29.47 15.93 19.72 0.31 -29.15 16 8 O -0.33 -16.75 9.09 -57.08 -0.52 -17.27 16 9 C 0.13 6.69 4.45 71.98 0.32 7.01 16 10 C 0.00 0.22 2.20 -52.93 -0.12 0.11 16 11 C -0.50 -27.45 8.80 25.60 0.23 -27.22 16 12 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 13 C 0.03 1.45 5.36 84.66 0.45 1.90 16 14 N -0.91 -52.92 10.18 21.45 0.22 -52.70 16 15 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.19 -8.37 9.96 30.62 0.30 -8.06 16 20 C -0.19 -7.96 9.93 30.62 0.30 -7.66 16 21 H 0.09 1.32 7.41 -2.39 -0.02 1.30 16 22 H 0.09 1.26 7.77 -2.39 -0.02 1.24 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.11 3.37 7.50 -2.91 -0.02 3.34 16 25 H 0.10 2.25 6.33 -2.39 -0.02 2.24 16 26 H 0.05 1.90 7.75 -2.38 -0.02 1.88 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.43 7.81 -2.39 -0.02 1.42 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.02 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.09 5.11 5.74 -2.39 -0.01 5.09 16 32 H 0.26 14.63 8.32 -92.71 -0.77 13.86 16 33 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 34 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 35 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -67.44 305.48 6.78 -60.66 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.05 Total: 17.25 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 3.69 Total: -24.65 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.22 Total: -52.70 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.20 Total: -46.43 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.44 6.78 -60.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789384658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.412 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds