Wall clock time and date at job start Sun Mar 29 2020 22:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50704 * 119.99609 * 2 1 4 4 C 1.30998 * 119.99939 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00257 * 359.97438 * 4 2 1 6 6 H 1.08996 * 115.54914 * 25.72737 * 5 4 2 7 7 C 1.52999 * 117.49570 * 171.38962 * 5 4 2 8 8 H 1.09003 * 117.49891 * 214.98000 * 7 5 4 9 9 C 1.50697 * 117.50201 * 0.02562 * 7 5 4 10 10 O 1.21218 * 120.00039 * 117.88686 * 9 7 5 11 11 O 1.34304 * 120.00106 * 297.88607 * 9 7 5 12 12 C 1.34928 * 117.00051 * 179.97438 * 11 9 7 13 13 H 1.08000 * 119.99553 * 0.02562 * 12 11 9 14 14 C 1.38752 * 120.00003 * 179.97438 * 12 11 9 15 15 N 1.31448 * 120.00033 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46825 * 90.00036 * 16 14 12 18 18 H 1.48497 * 109.47205 * 210.00312 * 16 14 12 19 19 H 1.48501 * 109.46704 * 330.00375 * 16 14 12 20 20 C 1.52994 * 117.50034 * 240.01455 * 5 4 2 21 21 C 1.53000 * 117.49956 * 0.02562 * 20 5 4 22 22 C 1.53002 * 117.50073 * 145.02572 * 20 5 4 23 23 H 1.09000 * 109.46751 * 90.00624 * 1 2 3 24 24 H 1.08996 * 109.47164 * 330.00292 * 1 2 3 25 25 H 1.08995 * 109.47007 * 209.99855 * 1 2 3 26 26 H 1.09000 * 109.46709 * 90.00115 * 3 2 1 27 27 H 1.09000 * 109.46756 * 209.99370 * 3 2 1 28 28 H 1.08996 * 109.47419 * 329.99866 * 3 2 1 29 29 H 1.08006 * 119.99639 * 180.02562 * 4 2 1 30 30 H 0.96997 * 119.99967 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.46974 * 65.63750 * 21 20 5 32 32 H 1.09001 * 109.47106 * 185.63570 * 21 20 5 33 33 H 1.09000 * 109.47214 * 305.63551 * 21 20 5 34 34 H 1.08998 * 109.47542 * 59.99320 * 22 20 5 35 35 H 1.08993 * 109.47600 * 180.02562 * 22 20 5 36 36 H 1.09001 * 109.46752 * 300.00013 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4086 -2.4396 0.0017 6 1 0.4062 -2.4041 -0.4248 7 6 2.2175 -3.7224 -0.2010 8 1 1.7470 -4.5310 -0.7604 9 6 3.7066 -3.5841 -0.3859 10 8 4.4659 -4.0852 0.4153 11 8 4.1926 -2.9058 -1.4382 12 6 5.5349 -2.8192 -1.5444 13 1 6.1663 -3.2845 -0.8019 14 6 6.1039 -2.1333 -2.6078 15 7 5.3353 -1.5675 -3.5116 16 14 7.9623 -2.0140 -2.7552 17 1 8.4707 -3.1628 -3.5469 18 1 8.3244 -0.7448 -3.4356 19 1 8.5689 -2.0397 -1.3999 20 6 1.6432 -3.3897 1.1777 21 6 2.6244 -2.9419 2.2628 22 6 0.4526 -4.2176 1.6655 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 2.4421 1.6198 1.0277 27 1 3.2129 1.1748 -0.5137 28 1 1.6714 2.0648 -0.5138 29 1 3.2421 -1.1344 0.0009 30 1 5.7331 -1.0877 -4.2549 31 1 2.2233 -2.0687 2.7774 32 1 2.7685 -3.7511 2.9787 33 1 3.5804 -2.6868 1.8055 34 1 0.0913 -4.8483 0.8532 35 1 0.7636 -4.8439 2.5015 36 1 -0.3458 -3.5499 1.9895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805782085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:51 Heat of formation + Delta-G solvation = -56.148567 kcal Electronic energy + Delta-G solvation = -17490.593442 eV Core-core repulsion = 14747.956126 eV Total energy + Delta-G solvation = -2742.637315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75736 -37.72783 -35.38597 -34.67999 -32.08539 -29.53890 -27.62767 -27.37877 -26.61249 -25.35870 -22.84983 -19.99671 -18.43556 -17.65825 -17.43871 -16.08382 -15.43061 -14.72204 -14.35599 -14.04701 -13.83123 -13.62058 -13.28917 -13.00537 -12.83826 -12.13254 -12.09388 -11.97098 -11.85618 -11.58955 -11.45773 -11.22868 -11.17093 -10.98677 -10.45359 -10.40469 -10.35158 -9.96424 -9.78994 -9.35785 -8.89570 -8.52184 -8.00504 -6.36009 -4.03890 2.54523 3.13323 3.20633 3.26277 3.57355 3.87229 4.17390 4.61188 5.00183 5.04082 5.14775 5.32478 5.34599 5.39080 5.46956 5.73672 5.79661 5.83014 5.87580 5.98554 6.02028 6.08207 6.10955 6.22805 6.27245 6.29054 6.37256 6.41847 6.57338 6.82233 6.91289 7.20599 7.39270 7.44228 8.00196 8.77582 9.12609 9.95265 10.81518 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.008437 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.884578 B = 3318.022007 C = 4122.736170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.148 4.148 3 C -0.112 4.112 4 C -0.107 4.107 5 C -0.098 4.098 6 H 0.112 0.888 7 C -0.131 4.131 8 H 0.126 0.874 9 C 0.429 3.571 10 O -0.551 6.551 11 O -0.206 6.206 12 C -0.384 4.384 13 H 0.094 0.906 14 C 0.044 3.956 15 N -0.862 5.862 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.267 1.267 20 C -0.093 4.093 21 C -0.116 4.116 22 C -0.112 4.112 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.268 0.732 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 1.911 6.752 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.148 4.148 3 C -0.168 4.168 4 C -0.125 4.125 5 C -0.116 4.116 6 H 0.130 0.870 7 C -0.150 4.150 8 H 0.143 0.857 9 C 0.276 3.724 10 O -0.448 6.448 11 O -0.113 6.113 12 C -0.460 4.460 13 H 0.111 0.889 14 C -0.161 4.161 15 N -0.498 5.498 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.093 4.093 21 C -0.173 4.173 22 C -0.169 4.169 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.356 1.931 6.742 11.693 hybrid contribution 0.937 -0.050 -0.357 1.004 sum -8.419 1.881 6.385 10.733 Atomic orbital electron populations 1.20801 0.92938 1.01672 1.01534 1.21358 0.95262 0.94895 1.03266 1.20739 1.00174 0.94669 1.01253 1.22103 0.99597 0.91284 0.99537 1.21461 0.99077 0.89345 1.01685 0.87005 1.21968 0.91108 1.00779 1.01117 0.85658 1.22068 0.89233 0.79536 0.81597 1.90545 1.59654 1.49156 1.45444 1.83938 1.25485 1.60833 1.41022 1.21210 0.78409 1.35438 1.10948 0.88886 1.25291 1.00288 0.95726 0.94751 1.70010 1.35387 1.32523 1.11926 0.85745 0.81043 0.77951 0.78899 1.19945 1.20372 1.19163 1.21628 0.98180 1.00186 0.89326 1.21398 0.98848 1.00175 0.96899 1.21346 0.95631 0.98724 1.01159 0.91966 0.92659 0.91891 0.92265 0.91453 0.92458 0.86392 0.92214 0.92863 0.92444 0.90747 0.92376 0.91940 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.26 36.01 0.33 -1.13 16 2 C -0.15 -2.41 6.05 -101.06 -0.61 -3.02 16 3 C -0.11 -1.69 10.02 36.01 0.36 -1.32 16 4 C -0.11 -2.04 7.51 -36.03 -0.27 -2.31 16 5 C -0.10 -1.68 4.75 -91.78 -0.44 -2.12 16 6 H 0.11 1.67 6.75 -51.93 -0.35 1.31 16 7 C -0.13 -2.56 5.89 -91.77 -0.54 -3.10 16 8 H 0.13 2.19 8.05 -51.93 -0.42 1.77 16 9 C 0.43 10.86 5.29 36.00 0.19 11.05 16 10 O -0.55 -15.01 14.46 -19.06 -0.28 -15.28 16 11 O -0.21 -5.95 8.92 -20.71 -0.18 -6.13 16 12 C -0.38 -11.42 9.65 30.92 0.30 -11.12 16 13 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 14 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 15 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 16 Si 0.94 21.53 29.55 -169.99 -5.02 16.51 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.09 -1.52 2.70 -154.51 -0.42 -1.93 16 21 C -0.12 -2.00 8.30 37.16 0.31 -1.69 16 22 C -0.11 -1.38 9.85 37.16 0.37 -1.01 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 25 H 0.06 0.77 6.48 -51.93 -0.34 0.43 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 28 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.12 2.69 6.63 -52.48 -0.35 2.35 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.91 8.02 -51.93 -0.42 0.50 16 33 H 0.07 1.55 5.50 -51.93 -0.29 1.27 16 34 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 35 H 0.06 0.73 7.99 -51.93 -0.41 0.31 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -32.36 302.03 -6.12 -38.48 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.43 Total: 3.06 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.51 Total: -16.58 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.76 Total: -24.60 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.46 Total: -21.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.36 -6.12 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805782085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.674 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds