Wall clock time and date at job start Sun Mar 29 2020 22:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50704 * 119.99609 * 2 1 4 4 C 1.30998 * 119.99939 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00257 * 359.97438 * 4 2 1 6 6 H 1.08996 * 115.54914 * 25.72737 * 5 4 2 7 7 C 1.52999 * 117.49570 * 171.38962 * 5 4 2 8 8 H 1.09003 * 117.49891 * 214.98000 * 7 5 4 9 9 C 1.50697 * 117.50201 * 0.02562 * 7 5 4 10 10 O 1.21218 * 120.00039 * 117.88686 * 9 7 5 11 11 O 1.34304 * 120.00106 * 297.88607 * 9 7 5 12 12 C 1.34928 * 117.00051 * 179.97438 * 11 9 7 13 13 H 1.08000 * 119.99553 * 0.02562 * 12 11 9 14 14 C 1.38752 * 120.00003 * 179.97438 * 12 11 9 15 15 N 1.31448 * 120.00033 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46825 * 90.00036 * 16 14 12 18 18 H 1.48497 * 109.47205 * 210.00312 * 16 14 12 19 19 H 1.48501 * 109.46704 * 330.00375 * 16 14 12 20 20 C 1.52994 * 117.50034 * 240.01455 * 5 4 2 21 21 C 1.53000 * 117.49956 * 0.02562 * 20 5 4 22 22 C 1.53002 * 117.50073 * 145.02572 * 20 5 4 23 23 H 1.09000 * 109.46751 * 90.00624 * 1 2 3 24 24 H 1.08996 * 109.47164 * 330.00292 * 1 2 3 25 25 H 1.08995 * 109.47007 * 209.99855 * 1 2 3 26 26 H 1.09000 * 109.46709 * 90.00115 * 3 2 1 27 27 H 1.09000 * 109.46756 * 209.99370 * 3 2 1 28 28 H 1.08996 * 109.47419 * 329.99866 * 3 2 1 29 29 H 1.08006 * 119.99639 * 180.02562 * 4 2 1 30 30 H 0.96997 * 119.99967 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.46974 * 65.63750 * 21 20 5 32 32 H 1.09001 * 109.47106 * 185.63570 * 21 20 5 33 33 H 1.09000 * 109.47214 * 305.63551 * 21 20 5 34 34 H 1.08998 * 109.47542 * 59.99320 * 22 20 5 35 35 H 1.08993 * 109.47600 * 180.02562 * 22 20 5 36 36 H 1.09001 * 109.46752 * 300.00013 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4086 -2.4396 0.0017 6 1 0.4062 -2.4041 -0.4248 7 6 2.2175 -3.7224 -0.2010 8 1 1.7470 -4.5310 -0.7604 9 6 3.7066 -3.5841 -0.3859 10 8 4.4659 -4.0852 0.4153 11 8 4.1926 -2.9058 -1.4382 12 6 5.5349 -2.8192 -1.5444 13 1 6.1663 -3.2845 -0.8019 14 6 6.1039 -2.1333 -2.6078 15 7 5.3353 -1.5675 -3.5116 16 14 7.9623 -2.0140 -2.7552 17 1 8.4707 -3.1628 -3.5469 18 1 8.3244 -0.7448 -3.4356 19 1 8.5689 -2.0397 -1.3999 20 6 1.6432 -3.3897 1.1777 21 6 2.6244 -2.9419 2.2628 22 6 0.4526 -4.2176 1.6655 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 2.4421 1.6198 1.0277 27 1 3.2129 1.1748 -0.5137 28 1 1.6714 2.0648 -0.5138 29 1 3.2421 -1.1344 0.0009 30 1 5.7331 -1.0877 -4.2549 31 1 2.2233 -2.0687 2.7774 32 1 2.7685 -3.7511 2.9787 33 1 3.5804 -2.6868 1.8055 34 1 0.0913 -4.8483 0.8532 35 1 0.7636 -4.8439 2.5015 36 1 -0.3458 -3.5499 1.9895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805782085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:51 Heat of formation + Delta-G solvation = -74.874643 kcal Electronic energy + Delta-G solvation = -17491.405465 eV Core-core repulsion = 14747.956126 eV Total energy + Delta-G solvation = -2743.449339 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51629 -39.44403 -37.17618 -36.29652 -34.29358 -30.82479 -28.83997 -28.67371 -28.03732 -27.28834 -24.56578 -21.63250 -19.94855 -19.83161 -18.91279 -18.01294 -17.00763 -16.58417 -16.25684 -15.64569 -15.23623 -14.88891 -14.69619 -14.46789 -14.17175 -13.75651 -13.55068 -13.22611 -13.19197 -13.14385 -12.97680 -12.70614 -12.45132 -12.38563 -12.24062 -12.16568 -12.01742 -11.70523 -11.39577 -10.88724 -10.78009 -10.67790 -9.34469 -8.53968 -6.33567 1.16833 1.29136 1.29578 1.46514 1.64690 2.07650 2.58126 2.95349 2.97804 3.61491 3.71278 3.89246 4.12695 4.15637 4.25114 4.44028 4.66440 4.67866 4.71345 4.79184 4.82198 4.87936 4.97106 4.99760 5.05277 5.07017 5.09457 5.15282 5.19386 5.26411 5.30365 5.49777 5.82874 5.83288 6.07196 6.67631 6.90677 7.82046 8.66294 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022027 B = 0.008437 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.884578 B = 3318.022007 C = 4122.736170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.151 4.151 5 C -0.081 4.081 6 H 0.146 0.854 7 C -0.167 4.167 8 H 0.149 0.851 9 C 0.430 3.570 10 O -0.580 6.580 11 O -0.234 6.234 12 C -0.422 4.422 13 H 0.075 0.925 14 C -0.001 4.001 15 N -0.898 5.898 16 Si 1.012 2.988 17 H -0.259 1.259 18 H -0.258 1.258 19 H -0.266 1.266 20 C -0.072 4.072 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.277 0.723 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 2.445 7.297 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.173 4.173 4 C -0.169 4.169 5 C -0.099 4.099 6 H 0.164 0.836 7 C -0.185 4.185 8 H 0.166 0.834 9 C 0.278 3.722 10 O -0.478 6.478 11 O -0.142 6.142 12 C -0.498 4.498 13 H 0.093 0.907 14 C -0.202 4.202 15 N -0.535 5.535 16 Si 0.831 3.169 17 H -0.184 1.184 18 H -0.182 1.182 19 H -0.191 1.191 20 C -0.073 4.073 21 C -0.173 4.173 22 C -0.163 4.163 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.609 2.457 7.293 13.928 hybrid contribution 1.599 -0.147 -0.454 1.668 sum -10.010 2.310 6.839 12.341 Atomic orbital electron populations 1.20878 0.89438 1.03686 1.02718 1.21820 0.97670 0.94035 0.99165 1.20823 0.98938 0.95228 1.02310 1.21862 0.97196 0.93675 1.04160 1.21584 0.99286 0.87241 1.01791 0.83602 1.22193 0.87299 1.03750 1.05300 0.83352 1.23258 0.91787 0.77277 0.79841 1.90492 1.61381 1.49984 1.45972 1.83960 1.25102 1.62313 1.42829 1.21359 0.79150 1.37407 1.11889 0.90690 1.26460 1.05868 0.94301 0.93563 1.70094 1.37934 1.32942 1.12529 0.84713 0.73905 0.79165 0.79125 1.18361 1.18219 1.19065 1.21880 0.98479 0.99373 0.87530 1.21368 0.97084 1.01477 0.97390 1.21408 0.94148 0.98900 1.01866 0.90958 0.90185 0.90423 0.90455 0.94866 0.89820 0.91988 0.91341 0.90785 0.91408 0.95574 0.90945 0.91146 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.26 71.24 0.66 -1.77 16 2 C -0.13 -3.99 6.05 -16.48 -0.10 -4.09 16 3 C -0.12 -3.46 10.02 71.24 0.71 -2.75 16 4 C -0.15 -5.86 7.51 25.65 0.19 -5.67 16 5 C -0.08 -2.71 4.75 -11.54 -0.05 -2.76 16 6 H 0.15 3.82 6.75 -2.39 -0.02 3.80 16 7 C -0.17 -6.60 5.89 -11.54 -0.07 -6.66 16 8 H 0.15 5.07 8.05 -2.39 -0.02 5.05 16 9 C 0.43 23.10 5.29 71.23 0.38 23.48 16 10 O -0.58 -33.75 14.46 20.75 0.30 -33.45 16 11 O -0.23 -14.47 8.92 14.85 0.13 -14.33 16 12 C -0.42 -26.76 9.65 67.94 0.66 -26.11 16 13 H 0.08 4.86 6.86 -2.91 -0.02 4.84 16 14 C 0.00 -0.08 5.49 84.87 0.47 0.38 16 15 N -0.90 -54.59 13.67 21.62 0.30 -54.29 16 16 Si 1.01 45.13 29.55 68.60 2.03 47.16 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C -0.07 -2.26 2.70 -52.18 -0.14 -2.40 16 21 C -0.12 -4.01 8.30 71.98 0.60 -3.41 16 22 C -0.11 -2.20 9.85 71.98 0.71 -1.49 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 25 H 0.08 1.51 6.48 -2.39 -0.02 1.49 16 26 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 28 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 29 H 0.06 3.11 6.63 -2.91 -0.02 3.09 16 30 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 2.13 8.02 -2.39 -0.02 2.11 16 33 H 0.03 1.14 5.50 -2.39 -0.01 1.13 16 34 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 35 H 0.07 1.37 7.99 -2.39 -0.02 1.35 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.75 302.03 7.82 -68.93 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.05 Total: 19.23 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.01 Total: -33.24 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.30 Total: -54.29 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: 0.43 Total: -47.78 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -76.75 7.82 -68.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805782085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.941 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds