Wall clock time and date at job start Sun Mar 29 2020 23:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99654 * 2 1 4 4 H 1.48504 * 109.47088 * 239.99804 * 3 2 1 5 5 H 1.48492 * 109.47621 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46734 * 120.00403 * 3 2 1 7 7 C 1.37877 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99832 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46624 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46587 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99544 * 179.97438 * 11 10 9 13 13 O 1.21582 * 120.00321 * 355.01736 * 12 11 10 14 14 N 1.34777 * 119.99901 * 175.01435 * 12 11 10 15 15 C 1.45654 * 119.49368 * 185.14865 * 14 12 11 16 16 C 1.51593 * 111.75637 * 218.75114 * 15 14 12 17 17 C 1.51352 * 113.19979 * 303.63742 * 16 15 14 18 18 C 1.52217 * 112.81578 * 48.13430 * 17 16 15 19 19 H 1.08996 * 115.46640 * 126.12402 * 18 17 16 20 20 C 1.53585 * 116.45704 * 268.90533 * 18 17 16 21 21 C 1.45920 * 119.49039 * 4.87587 * 14 12 11 22 22 H 1.09000 * 115.19055 * 22.62506 * 21 14 12 23 23 H 0.97005 * 119.99907 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47292 * 59.99760 * 9 7 2 25 25 H 1.08999 * 109.47181 * 299.99916 * 9 7 2 26 26 H 1.08996 * 109.47453 * 60.00221 * 10 9 7 27 27 H 1.09003 * 109.47258 * 299.98991 * 10 9 7 28 28 H 0.96999 * 120.00362 * 359.97438 * 11 10 9 29 29 H 1.08996 * 109.02715 * 339.33891 * 15 14 12 30 30 H 1.09005 * 109.02231 * 98.16624 * 15 14 12 31 31 H 1.09001 * 108.73589 * 64.59093 * 16 15 14 32 32 H 1.08994 * 108.74293 * 182.67683 * 16 15 14 33 33 H 1.09002 * 108.81421 * 168.98797 * 17 16 15 34 34 H 1.08996 * 108.81708 * 287.26949 * 17 16 15 35 35 H 1.09001 * 117.51634 * 217.71597 * 20 18 17 36 36 H 1.09001 * 117.50997 * 2.81413 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5127 -4.9307 -0.0020 12 6 2.1866 -6.0979 -0.0024 13 8 3.3990 -6.0999 -0.0938 14 7 1.5166 -7.2630 0.0986 15 6 2.2601 -8.5104 0.2106 16 6 1.6050 -9.6276 -0.5773 17 6 0.1652 -9.8725 -0.1803 18 6 -0.6533 -8.5912 -0.1082 19 1 -1.5699 -8.5867 -0.6980 20 6 -0.7016 -7.8859 1.2553 21 6 0.0574 -7.2546 0.1000 22 1 -0.4020 -6.3773 -0.3554 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.8712 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 0.5427 -4.9307 -0.0020 29 1 3.2715 -8.3563 -0.1653 30 1 2.3128 -8.7996 1.2603 31 1 1.6377 -9.3745 -1.6370 32 1 2.1721 -10.5453 -0.4214 33 1 -0.2919 -10.5409 -0.9100 34 1 0.1472 -10.3566 0.7961 35 1 -1.6441 -7.4247 1.5506 36 1 -0.1141 -8.3167 2.0661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807103411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:31 Heat of formation + Delta-G solvation = -14.258443 kcal Electronic energy + Delta-G solvation = -16881.853644 eV Core-core repulsion = 14173.325572 eV Total energy + Delta-G solvation = -2708.528072 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49188 -38.24633 -35.01572 -33.62817 -33.23749 -32.48279 -29.49284 -26.70572 -24.59108 -23.41718 -22.27608 -21.05276 -20.50659 -18.64240 -17.88022 -16.42791 -15.88835 -15.61766 -15.28829 -14.52558 -14.33412 -14.20240 -13.96140 -13.67953 -13.18597 -12.84641 -12.28523 -12.07598 -11.65137 -11.41005 -11.15430 -11.00917 -10.99149 -10.77750 -10.62691 -10.28576 -10.17391 -9.81085 -9.51501 -9.25480 -8.61498 -8.40827 -8.08710 -6.07119 -4.09692 2.85992 3.33103 3.34556 3.36693 3.40368 3.75367 4.19388 4.45181 4.49296 4.54568 4.76533 4.78975 4.93608 5.17649 5.26790 5.29953 5.53079 5.64297 5.68529 5.70191 5.79258 5.93128 5.99976 6.09345 6.30198 6.42545 6.68797 6.79985 7.02639 7.19549 7.57785 7.65580 7.91911 8.26646 8.39150 8.93649 8.99239 9.54886 11.04561 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048020 B = 0.004582 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.944588 B = 6109.893410 C = 6562.006136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.138 3.862 11 N -0.736 5.736 12 C 0.703 3.297 13 O -0.594 6.594 14 N -0.601 5.601 15 C 0.131 3.869 16 C -0.131 4.131 17 C -0.086 4.086 18 C -0.158 4.158 19 H 0.112 0.888 20 C -0.190 4.190 21 C 0.087 3.913 22 H 0.125 0.875 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.393 0.607 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -18.868 0.366 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.015 3.985 11 N -0.390 5.390 12 C 0.405 3.595 13 O -0.473 6.473 14 N -0.337 5.337 15 C 0.007 3.993 16 C -0.169 4.169 17 C -0.124 4.124 18 C -0.178 4.178 19 H 0.130 0.870 20 C -0.229 4.229 21 C -0.020 4.020 22 H 0.143 0.857 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.228 0.772 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.303 -18.710 0.306 18.854 hybrid contribution -0.234 0.916 0.054 0.947 sum -2.537 -17.795 0.360 17.978 Atomic orbital electron populations 1.69950 1.06091 1.26936 1.50421 1.24988 0.94886 0.99369 0.94997 0.86568 0.79509 0.82642 0.78788 1.20110 1.21265 1.20108 1.21016 0.93244 0.90361 1.51333 0.92260 1.19316 0.94250 0.91069 0.97775 1.21615 0.95701 0.80468 1.00668 1.45669 1.09944 1.05261 1.78170 1.15950 0.85261 0.80362 0.77928 1.90874 1.11938 1.86093 1.58371 1.46111 1.03964 1.05791 1.77799 1.20723 0.96548 0.82449 0.99557 1.21141 0.96085 0.98554 1.01104 1.20521 0.94501 0.95373 1.02000 1.22543 1.01373 0.93189 1.00656 0.87038 1.23527 1.02523 1.04598 0.92296 1.21211 0.80803 0.97320 1.02628 0.85714 0.92827 0.96000 0.95982 0.92818 0.92677 0.77210 0.88877 0.92969 0.91569 0.90515 0.91285 0.91739 0.87811 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.04 16 11 N -0.74 -13.85 5.45 -65.22 -0.36 -14.20 16 12 C 0.70 13.26 8.24 -86.91 -0.72 12.54 16 13 O -0.59 -13.28 15.71 5.29 0.08 -13.20 16 14 N -0.60 -8.78 3.14 -174.48 -0.55 -9.33 16 15 C 0.13 1.62 6.13 -5.21 -0.03 1.59 16 16 C -0.13 -1.21 5.88 -28.28 -0.17 -1.38 16 17 C -0.09 -0.71 5.81 -27.96 -0.16 -0.87 16 18 C -0.16 -1.46 6.27 -90.82 -0.57 -2.03 16 19 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.19 -1.86 9.98 -26.95 -0.27 -2.13 16 21 C 0.09 1.02 5.78 -68.87 -0.40 0.62 16 22 H 0.13 1.43 6.46 -51.93 -0.34 1.10 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.39 6.50 6.18 -40.82 -0.25 6.25 16 29 H 0.09 1.31 7.02 -51.93 -0.36 0.95 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -31.99 295.11 -9.11 -41.10 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.56 Total: 1.98 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.89 Total: -1.76 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.17 Total: -49.07 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.99 -9.11 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807103411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.840 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds