Wall clock time and date at job start Sun Mar 29 2020 23:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99654 * 2 1 4 4 H 1.48504 * 109.47088 * 239.99804 * 3 2 1 5 5 H 1.48492 * 109.47621 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46734 * 120.00403 * 3 2 1 7 7 C 1.37877 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99832 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46624 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46587 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99544 * 179.97438 * 11 10 9 13 13 O 1.21582 * 120.00321 * 355.01736 * 12 11 10 14 14 N 1.34777 * 119.99901 * 175.01435 * 12 11 10 15 15 C 1.45654 * 119.49368 * 185.14865 * 14 12 11 16 16 C 1.51593 * 111.75637 * 218.75114 * 15 14 12 17 17 C 1.51352 * 113.19979 * 303.63742 * 16 15 14 18 18 C 1.52217 * 112.81578 * 48.13430 * 17 16 15 19 19 H 1.08996 * 115.46640 * 126.12402 * 18 17 16 20 20 C 1.53585 * 116.45704 * 268.90533 * 18 17 16 21 21 C 1.45920 * 119.49039 * 4.87587 * 14 12 11 22 22 H 1.09000 * 115.19055 * 22.62506 * 21 14 12 23 23 H 0.97005 * 119.99907 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47292 * 59.99760 * 9 7 2 25 25 H 1.08999 * 109.47181 * 299.99916 * 9 7 2 26 26 H 1.08996 * 109.47453 * 60.00221 * 10 9 7 27 27 H 1.09003 * 109.47258 * 299.98991 * 10 9 7 28 28 H 0.96999 * 120.00362 * 359.97438 * 11 10 9 29 29 H 1.08996 * 109.02715 * 339.33891 * 15 14 12 30 30 H 1.09005 * 109.02231 * 98.16624 * 15 14 12 31 31 H 1.09001 * 108.73589 * 64.59093 * 16 15 14 32 32 H 1.08994 * 108.74293 * 182.67683 * 16 15 14 33 33 H 1.09002 * 108.81421 * 168.98797 * 17 16 15 34 34 H 1.08996 * 108.81708 * 287.26949 * 17 16 15 35 35 H 1.09001 * 117.51634 * 217.71597 * 20 18 17 36 36 H 1.09001 * 117.50997 * 2.81413 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5127 -4.9307 -0.0020 12 6 2.1866 -6.0979 -0.0024 13 8 3.3990 -6.0999 -0.0938 14 7 1.5166 -7.2630 0.0986 15 6 2.2601 -8.5104 0.2106 16 6 1.6050 -9.6276 -0.5773 17 6 0.1652 -9.8725 -0.1803 18 6 -0.6533 -8.5912 -0.1082 19 1 -1.5699 -8.5867 -0.6980 20 6 -0.7016 -7.8859 1.2553 21 6 0.0574 -7.2546 0.1000 22 1 -0.4020 -6.3773 -0.3554 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.8712 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 0.5427 -4.9307 -0.0020 29 1 3.2715 -8.3563 -0.1653 30 1 2.3128 -8.7996 1.2603 31 1 1.6377 -9.3745 -1.6370 32 1 2.1721 -10.5453 -0.4214 33 1 -0.2919 -10.5409 -0.9100 34 1 0.1472 -10.3566 0.7961 35 1 -1.6441 -7.4247 1.5506 36 1 -0.1141 -8.3167 2.0661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807103411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:31 Heat of formation + Delta-G solvation = -34.479872 kcal Electronic energy + Delta-G solvation = -16882.730511 eV Core-core repulsion = 14173.325572 eV Total energy + Delta-G solvation = -2709.404939 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69167 -39.44937 -36.72787 -34.96591 -34.69825 -33.81434 -31.33963 -27.82747 -26.40061 -24.36966 -23.46998 -22.74181 -21.65751 -19.97107 -18.88842 -18.47006 -17.25437 -16.86942 -16.56937 -16.27320 -15.57552 -15.50965 -15.17283 -14.95350 -14.33439 -14.24969 -14.07243 -13.25422 -12.94345 -12.92420 -12.58914 -12.52674 -12.24868 -12.18291 -11.77132 -11.69742 -11.59031 -11.52179 -11.27604 -10.73680 -10.59791 -10.14172 -9.30896 -8.23564 -6.34150 1.42272 1.45061 1.52456 1.61221 1.99884 2.41080 2.81556 2.90596 3.11177 3.70544 3.76206 3.92630 3.99738 4.09186 4.35052 4.42624 4.49686 4.50899 4.71495 4.81827 4.85611 4.87461 4.94419 5.05974 5.20611 5.25602 5.29197 5.38400 5.48309 5.57660 5.61023 5.78387 5.92030 6.16685 6.78176 6.93997 7.35054 7.49532 8.88279 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048020 B = 0.004582 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.944588 B = 6109.893410 C = 6562.006136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.159 3.841 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.636 6.636 14 N -0.593 5.593 15 C 0.124 3.876 16 C -0.123 4.123 17 C -0.088 4.088 18 C -0.138 4.138 19 H 0.131 0.869 20 C -0.181 4.181 21 C 0.049 3.951 22 H 0.123 0.877 23 H 0.266 0.734 24 H 0.008 0.992 25 H 0.009 0.991 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.404 0.596 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -20.006 0.467 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.035 3.965 11 N -0.387 5.387 12 C 0.400 3.600 13 O -0.518 6.518 14 N -0.327 5.327 15 C 0.001 3.999 16 C -0.161 4.161 17 C -0.125 4.125 18 C -0.158 4.158 19 H 0.149 0.851 20 C -0.219 4.219 21 C -0.056 4.056 22 H 0.141 0.859 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.241 0.759 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.116 -19.902 0.412 20.148 hybrid contribution -0.037 1.192 0.033 1.193 sum -3.153 -18.710 0.445 18.979 Atomic orbital electron populations 1.70054 1.07543 1.28085 1.50884 1.25861 0.95796 1.03047 0.94298 0.85489 0.78306 0.78069 0.79130 1.19372 1.20477 1.19331 1.21424 0.93607 0.91848 1.51786 0.92287 1.19110 0.94170 0.91615 0.96297 1.21116 0.94726 0.81111 0.99596 1.45377 1.10355 1.04459 1.78541 1.16103 0.84858 0.81264 0.77814 1.90836 1.13814 1.86878 1.60286 1.46123 1.05396 1.04905 1.76305 1.20929 0.95782 0.82511 1.00671 1.21117 0.97152 0.98002 0.99830 1.20600 0.93398 0.95158 1.03370 1.22728 1.01238 0.91851 0.99938 0.85122 1.23575 1.02309 1.03873 0.92172 1.21483 0.79132 0.99407 1.05610 0.85948 0.92505 0.97371 0.97316 0.93799 0.93836 0.75870 0.91138 0.92039 0.92452 0.88066 0.89146 0.90567 0.86453 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.33 5.09 29.85 0.15 1.48 16 10 C 0.16 7.25 5.62 86.38 0.49 7.74 16 11 N -0.73 -28.16 5.45 -478.53 -2.61 -30.77 16 12 C 0.70 26.87 8.24 179.05 1.48 28.34 16 13 O -0.64 -29.36 15.71 -3.98 -0.06 -29.43 16 14 N -0.59 -17.17 3.14 -824.19 -2.59 -19.75 16 15 C 0.12 2.99 6.13 86.08 0.53 3.52 16 16 C -0.12 -2.00 5.88 29.59 0.17 -1.83 16 17 C -0.09 -1.14 5.81 29.80 0.17 -0.96 16 18 C -0.14 -2.13 6.27 -10.92 -0.07 -2.20 16 19 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 20 C -0.18 -3.11 9.98 30.45 0.30 -2.80 16 21 C 0.05 1.08 5.78 44.69 0.26 1.34 16 22 H 0.12 2.73 6.46 -2.39 -0.02 2.72 16 23 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 28 H 0.40 13.59 6.18 -92.71 -0.57 13.02 16 29 H 0.07 2.03 7.02 -2.39 -0.02 2.01 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.86 8.04 -2.39 -0.02 0.85 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -69.19 295.11 1.72 -67.47 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.49 Total: 16.19 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.18 Total: 4.65 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.91 Total: -104.87 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.19 1.72 -67.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807103411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.995 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds