Wall clock time and date at job start Sun Mar 29 2020 23:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00077 * 2 1 4 4 H 1.48507 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47244 * 240.00334 * 3 2 1 6 6 H 1.48499 * 109.47179 * 120.00132 * 3 2 1 7 7 C 1.37874 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99613 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00543 * 354.92904 * 12 11 10 14 14 N 1.34783 * 119.99719 * 174.92401 * 12 11 10 15 15 C 1.45664 * 119.49125 * 184.68820 * 14 12 11 16 16 C 1.51917 * 111.56776 * 141.12968 * 15 14 12 17 17 C 1.51347 * 113.09060 * 56.66545 * 16 15 14 18 18 C 1.52222 * 112.81927 * 311.72010 * 17 16 15 19 19 H 1.08998 * 115.21274 * 234.35459 * 18 17 16 20 20 C 1.53587 * 116.45343 * 91.09330 * 18 17 16 21 21 C 1.45906 * 119.49285 * 4.95512 * 14 12 11 22 22 H 1.09004 * 115.19691 * 336.24164 * 21 14 12 23 23 H 0.96999 * 119.99869 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47369 * 299.99993 * 9 7 2 25 25 H 1.09005 * 109.47396 * 60.00363 * 9 7 2 26 26 H 1.09002 * 109.46944 * 300.00397 * 10 9 7 27 27 H 1.09000 * 109.46486 * 59.99420 * 10 9 7 28 28 H 0.96996 * 120.00386 * 0.02562 * 11 10 9 29 29 H 1.09000 * 109.02197 * 261.83442 * 15 14 12 30 30 H 1.08999 * 109.02027 * 20.65856 * 15 14 12 31 31 H 1.09003 * 108.90105 * 295.65706 * 16 15 14 32 32 H 1.09000 * 108.68095 * 177.51595 * 16 15 14 33 33 H 1.09005 * 108.81004 * 190.86732 * 17 16 15 34 34 H 1.08990 * 108.81455 * 72.58502 * 17 16 15 35 35 H 1.08995 * 117.50938 * 142.28668 * 20 18 17 36 36 H 1.09001 * 117.54199 * 357.17915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2126 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0027 13 8 3.3988 -6.1000 -0.0975 14 7 1.5169 -7.2629 0.1012 15 6 2.2608 -8.5113 0.2019 16 6 1.6067 -9.4739 1.1782 17 6 0.1667 -9.7844 0.8310 18 6 -0.6524 -8.5353 0.5376 19 1 -1.5634 -8.4286 1.1265 20 6 -0.7019 -8.0781 -0.9278 21 6 0.0579 -7.2548 0.1051 22 1 -0.4001 -6.3183 0.4237 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8713 -3.6040 -0.8923 27 1 2.8726 -3.6047 0.8877 28 1 0.5428 -4.9308 -0.0005 29 1 2.3090 -8.9765 -0.7827 30 1 3.2738 -8.2948 0.5410 31 1 1.6402 -9.0402 2.1777 32 1 2.1740 -10.4046 1.1839 33 1 -0.2896 -10.3157 1.6663 34 1 0.1482 -10.4309 -0.0463 35 1 -1.6447 -7.6756 -1.2980 36 1 -0.1149 -8.6429 -1.6521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807103412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:34 Heat of formation + Delta-G solvation = -17.631768 kcal Electronic energy + Delta-G solvation = -16916.157227 eV Core-core repulsion = 14207.482876 eV Total energy + Delta-G solvation = -2708.674350 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55257 -38.31393 -35.18143 -33.70383 -33.38732 -32.60706 -29.30477 -26.66847 -24.24399 -23.46142 -22.36319 -21.36724 -20.59401 -18.76648 -17.97071 -16.67303 -16.08516 -15.72885 -15.28913 -14.53534 -14.38865 -14.08915 -13.81011 -13.71733 -13.39275 -12.93566 -12.26637 -12.09737 -11.67484 -11.60776 -11.44947 -11.04633 -10.95318 -10.83700 -10.41945 -10.24322 -10.16558 -9.95268 -9.75778 -8.68986 -8.68292 -8.38863 -8.17275 -6.42755 -4.12329 2.79253 3.27625 3.44441 3.46117 3.64681 3.67447 4.11570 4.44437 4.49041 4.53485 4.68617 4.73010 4.89000 5.12490 5.21221 5.35629 5.49200 5.58074 5.63495 5.64227 5.74035 5.87810 5.94466 6.04636 6.14994 6.28379 6.60873 6.65082 6.88904 7.07640 7.33590 7.37612 8.09246 8.26967 8.39764 8.80959 8.89013 9.59493 10.98360 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046900 B = 0.004604 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.870390 B = 6080.789093 C = 6503.100076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.053 0.947 9 C 0.000 4.000 10 C 0.146 3.854 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.601 5.601 15 C 0.132 3.868 16 C -0.131 4.131 17 C -0.087 4.087 18 C -0.158 4.158 19 H 0.112 0.888 20 C -0.188 4.188 21 C 0.084 3.916 22 H 0.125 0.875 23 H 0.268 0.732 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.392 0.608 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -19.179 1.163 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.640 4.640 8 H 0.072 0.928 9 C -0.037 4.037 10 C 0.023 3.977 11 N -0.393 5.393 12 C 0.406 3.594 13 O -0.471 6.471 14 N -0.337 5.337 15 C 0.009 3.991 16 C -0.169 4.169 17 C -0.125 4.125 18 C -0.177 4.177 19 H 0.130 0.870 20 C -0.227 4.227 21 C -0.022 4.022 22 H 0.142 0.858 23 H 0.078 0.922 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.227 0.773 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.876 -17.497 1.122 17.633 hybrid contribution -0.426 -1.761 -0.032 1.813 sum -2.302 -19.258 1.089 19.426 Atomic orbital electron populations 1.70804 1.06884 1.30498 1.46466 1.25881 0.96487 1.02792 0.93492 0.83505 0.74856 0.75039 0.76684 1.20746 1.21312 1.21316 1.21883 0.94568 0.91335 1.56189 0.92836 1.19453 0.94911 0.92879 0.96485 1.21451 0.95345 0.80007 1.00919 1.45667 1.09870 1.05333 1.78426 1.15931 0.85251 0.80304 0.77945 1.90884 1.11962 1.86125 1.58105 1.46114 1.03983 1.05887 1.77668 1.20792 0.96320 0.83126 0.98892 1.21207 0.96100 0.99524 1.00073 1.20531 0.94488 0.95543 1.01904 1.22536 1.01445 0.95508 0.98234 0.86999 1.23576 1.02427 1.04430 0.92303 1.21276 0.80816 0.96485 1.03621 0.85754 0.92217 0.96921 0.96876 0.92475 0.92642 0.77319 0.92865 0.89051 0.91533 0.90453 0.91230 0.91706 0.87855 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.47 13.65 55.43 0.76 -26.72 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.60 -17.12 9.11 -34.44 -0.31 -17.43 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.00 0.00 4.40 -27.88 -0.12 -0.12 16 10 C 0.15 3.26 5.62 -4.04 -0.02 3.23 16 11 N -0.74 -13.86 5.45 -65.22 -0.36 -14.22 16 12 C 0.70 13.26 8.24 -86.92 -0.72 12.55 16 13 O -0.59 -13.27 15.76 5.29 0.08 -13.18 16 14 N -0.60 -8.73 3.13 -174.11 -0.55 -9.28 16 15 C 0.13 1.63 6.08 -5.04 -0.03 1.60 16 16 C -0.13 -1.20 5.89 -28.12 -0.17 -1.37 16 17 C -0.09 -0.71 5.81 -27.96 -0.16 -0.87 16 18 C -0.16 -1.43 6.25 -90.87 -0.57 -2.00 16 19 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.19 -1.80 10.00 -26.74 -0.27 -2.07 16 21 C 0.08 0.98 5.88 -68.73 -0.40 0.58 16 22 H 0.12 1.41 6.31 -51.93 -0.33 1.08 16 23 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 24 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 25 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.39 6.41 6.12 -40.82 -0.25 6.16 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.27 7.13 -51.93 -0.37 0.90 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -32.92 293.81 -9.09 -42.00 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.50 Total: 2.33 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.87 Total: -5.50 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.14 Total: -50.22 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.92 -9.09 -42.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807103412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.371 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds