Wall clock time and date at job start Sun Mar 29 2020 23:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00077 * 2 1 4 4 H 1.48507 * 109.47173 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47244 * 240.00334 * 3 2 1 6 6 H 1.48499 * 109.47179 * 120.00132 * 3 2 1 7 7 C 1.37874 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47278 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99613 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00543 * 354.92904 * 12 11 10 14 14 N 1.34783 * 119.99719 * 174.92401 * 12 11 10 15 15 C 1.45664 * 119.49125 * 184.68820 * 14 12 11 16 16 C 1.51917 * 111.56776 * 141.12968 * 15 14 12 17 17 C 1.51347 * 113.09060 * 56.66545 * 16 15 14 18 18 C 1.52222 * 112.81927 * 311.72010 * 17 16 15 19 19 H 1.08998 * 115.21274 * 234.35459 * 18 17 16 20 20 C 1.53587 * 116.45343 * 91.09330 * 18 17 16 21 21 C 1.45906 * 119.49285 * 4.95512 * 14 12 11 22 22 H 1.09004 * 115.19691 * 336.24164 * 21 14 12 23 23 H 0.96999 * 119.99869 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47369 * 299.99993 * 9 7 2 25 25 H 1.09005 * 109.47396 * 60.00363 * 9 7 2 26 26 H 1.09002 * 109.46944 * 300.00397 * 10 9 7 27 27 H 1.09000 * 109.46486 * 59.99420 * 10 9 7 28 28 H 0.96996 * 120.00386 * 0.02562 * 11 10 9 29 29 H 1.09000 * 109.02197 * 261.83442 * 15 14 12 30 30 H 1.08999 * 109.02027 * 20.65856 * 15 14 12 31 31 H 1.09003 * 108.90105 * 295.65706 * 16 15 14 32 32 H 1.09000 * 108.68095 * 177.51595 * 16 15 14 33 33 H 1.09005 * 108.81004 * 190.86732 * 17 16 15 34 34 H 1.08990 * 108.81455 * 72.58502 * 17 16 15 35 35 H 1.08995 * 117.50938 * 142.28668 * 20 18 17 36 36 H 1.09001 * 117.54199 * 357.17915 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2126 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0027 13 8 3.3988 -6.1000 -0.0975 14 7 1.5169 -7.2629 0.1012 15 6 2.2608 -8.5113 0.2019 16 6 1.6067 -9.4739 1.1782 17 6 0.1667 -9.7844 0.8310 18 6 -0.6524 -8.5353 0.5376 19 1 -1.5634 -8.4286 1.1265 20 6 -0.7019 -8.0781 -0.9278 21 6 0.0579 -7.2548 0.1051 22 1 -0.4001 -6.3183 0.4237 23 1 -0.4850 -0.8400 -0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8713 -3.6040 -0.8923 27 1 2.8726 -3.6047 0.8877 28 1 0.5428 -4.9308 -0.0005 29 1 2.3090 -8.9765 -0.7827 30 1 3.2738 -8.2948 0.5410 31 1 1.6402 -9.0402 2.1777 32 1 2.1740 -10.4046 1.1839 33 1 -0.2896 -10.3157 1.6663 34 1 0.1482 -10.4309 -0.0463 35 1 -1.6447 -7.6756 -1.2980 36 1 -0.1149 -8.6429 -1.6521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807103412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:34 Heat of formation + Delta-G solvation = -38.704703 kcal Electronic energy + Delta-G solvation = -16917.071018 eV Core-core repulsion = 14207.482876 eV Total energy + Delta-G solvation = -2709.588141 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75493 -39.50862 -36.95431 -35.19711 -34.74634 -33.83701 -31.14720 -27.74154 -26.14487 -24.42568 -23.68310 -22.97595 -21.72655 -20.13378 -18.96028 -18.75526 -17.42409 -16.99441 -16.37234 -15.99730 -15.64038 -15.55335 -15.38462 -14.98202 -14.55664 -14.15427 -14.06258 -13.69281 -12.99545 -12.91223 -12.60303 -12.29501 -12.24509 -12.09669 -11.87498 -11.78672 -11.66254 -11.55595 -10.84849 -10.75651 -10.58468 -10.24150 -9.37379 -8.72574 -6.43453 1.51599 1.56490 1.62632 1.82692 1.92012 2.55175 2.76032 2.81895 3.13239 3.65486 3.72230 3.87489 3.93763 4.04942 4.25811 4.31004 4.32595 4.45306 4.64749 4.67842 4.77952 4.82386 4.89646 5.02150 5.07756 5.17223 5.21978 5.31249 5.33992 5.37898 5.55349 5.83422 5.93114 6.12972 6.52104 6.86159 7.36008 7.41957 8.69775 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046900 B = 0.004604 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.870390 B = 6080.789093 C = 6503.100076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.118 2.882 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.624 4.624 8 H 0.050 0.950 9 C 0.009 3.991 10 C 0.166 3.834 11 N -0.733 5.733 12 C 0.699 3.301 13 O -0.635 6.635 14 N -0.592 5.592 15 C 0.125 3.875 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.139 4.139 19 H 0.131 0.869 20 C -0.177 4.177 21 C 0.046 3.954 22 H 0.123 0.877 23 H 0.258 0.742 24 H 0.006 0.994 25 H 0.005 0.995 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.404 0.596 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -20.480 1.370 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.229 4.229 3 Si 0.939 3.061 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.662 4.662 8 H 0.069 0.931 9 C -0.028 4.028 10 C 0.041 3.959 11 N -0.389 5.389 12 C 0.400 3.600 13 O -0.517 6.517 14 N -0.327 5.327 15 C 0.002 3.998 16 C -0.161 4.161 17 C -0.126 4.126 18 C -0.158 4.158 19 H 0.149 0.851 20 C -0.216 4.216 21 C -0.059 4.059 22 H 0.140 0.860 23 H 0.068 0.932 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.241 0.759 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.685 -18.870 1.332 19.107 hybrid contribution -0.224 -1.458 -0.105 1.479 sum -2.909 -20.328 1.227 20.572 Atomic orbital electron populations 1.70923 1.07752 1.30037 1.48126 1.27371 0.96585 1.06542 0.92356 0.82917 0.74136 0.71058 0.78003 1.20566 1.19586 1.19511 1.22297 0.94823 0.92950 1.56122 0.93150 1.19285 0.94895 0.93035 0.95599 1.20946 0.94422 0.80834 0.99665 1.45352 1.10316 1.04435 1.78793 1.16094 0.84848 0.81229 0.77830 1.90845 1.13884 1.86919 1.60055 1.46129 1.05444 1.04965 1.76124 1.21001 0.95572 0.82831 1.00352 1.21182 0.97179 0.99401 0.98332 1.20612 0.93372 0.95277 1.03346 1.22719 1.01288 0.93925 0.97848 0.85114 1.23630 1.02231 1.03178 0.92575 1.21557 0.79103 0.98202 1.07065 0.85953 0.93237 0.97560 0.97675 0.93888 0.93770 0.75860 0.91992 0.91305 0.92411 0.88008 0.89126 0.90511 0.86389 0.88674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.65 21.45 0.29 -56.22 16 2 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 3 Si 1.12 50.13 29.90 68.60 2.05 52.19 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.62 -35.87 9.11 25.60 0.23 -35.64 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.01 0.48 4.40 29.85 0.13 0.61 16 10 C 0.17 7.61 5.62 86.38 0.49 8.09 16 11 N -0.73 -28.03 5.45 -478.53 -2.61 -30.64 16 12 C 0.70 26.79 8.24 179.05 1.48 28.27 16 13 O -0.63 -29.35 15.76 -3.98 -0.06 -29.41 16 14 N -0.59 -16.99 3.13 -823.03 -2.58 -19.57 16 15 C 0.12 3.00 6.08 86.18 0.52 3.52 16 16 C -0.12 -1.97 5.89 29.70 0.17 -1.79 16 17 C -0.09 -1.12 5.81 29.80 0.17 -0.95 16 18 C -0.14 -2.09 6.25 -10.96 -0.07 -2.16 16 19 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 20 C -0.18 -2.95 10.00 30.59 0.31 -2.65 16 21 C 0.05 1.00 5.88 44.79 0.26 1.26 16 22 H 0.12 2.67 6.31 -2.38 -0.02 2.66 16 23 H 0.26 15.62 7.22 -92.71 -0.67 14.96 16 24 H 0.01 0.32 8.01 -2.39 -0.02 0.30 16 25 H 0.00 0.26 8.01 -2.38 -0.02 0.25 16 26 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.40 13.34 6.12 -92.71 -0.57 12.77 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.96 7.13 -2.39 -0.02 1.94 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 0.84 8.04 -2.39 -0.02 0.83 16 35 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -71.40 293.81 1.85 -69.55 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.60 Total: 16.82 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 4.16 Total: -2.70 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.90 Total: -106.44 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.06 Total: -29.41 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.19 kcal Total: -71.40 1.85 -69.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807103412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.844 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds