Wall clock time and date at job start Sun Mar 29 2020 22:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47187 * 300.62228 * 3 2 1 5 5 N 1.46899 * 109.47351 * 185.01139 * 4 3 2 6 6 C 1.46905 * 110.99899 * 163.39892 * 5 4 3 7 7 C 1.52994 * 109.46842 * 202.63352 * 6 5 4 8 8 H 1.08997 * 109.47626 * 53.40543 * 7 6 5 9 9 O 1.42901 * 109.47256 * 293.40363 * 7 6 5 10 10 C 1.50700 * 109.46821 * 173.40732 * 7 6 5 11 11 H 1.08001 * 120.00585 * 359.97438 * 10 7 6 12 12 C 1.37885 * 120.00040 * 180.02562 * 10 7 6 13 13 N 1.31511 * 119.99618 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 119.99908 * 179.97438 * 12 10 7 15 15 H 1.48507 * 109.47123 * 90.00189 * 14 12 10 16 16 H 1.48503 * 109.47128 * 209.99806 * 14 12 10 17 17 H 1.48492 * 109.47584 * 330.00057 * 14 12 10 18 18 C 1.46903 * 111.00248 * 287.35474 * 5 4 3 19 19 C 1.53005 * 109.46827 * 299.69820 * 18 5 4 20 20 C 1.53004 * 117.49402 * 241.06644 * 19 18 5 21 21 C 1.52998 * 117.49690 * 172.40742 * 19 18 5 22 22 H 1.09003 * 109.47572 * 180.62308 * 3 2 1 23 23 H 1.09000 * 109.47174 * 60.62036 * 3 2 1 24 24 H 1.09007 * 109.47175 * 65.01283 * 4 3 2 25 25 H 1.09000 * 109.47145 * 305.01419 * 4 3 2 26 26 H 1.08994 * 109.46788 * 322.63534 * 6 5 4 27 27 H 1.08999 * 109.46666 * 82.63406 * 6 5 4 28 28 H 0.96710 * 113.99936 * 296.93662 * 9 7 6 29 29 H 0.97005 * 119.99579 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.46876 * 59.69201 * 18 5 4 31 31 H 1.08994 * 109.47130 * 179.69955 * 18 5 4 32 32 H 1.08997 * 115.55363 * 26.72957 * 19 18 5 33 33 H 1.08998 * 117.49912 * 359.97438 * 20 19 18 34 34 H 1.08993 * 117.49839 * 145.02204 * 20 19 18 35 35 H 1.09000 * 117.49984 * 214.97916 * 21 19 18 36 36 H 1.09004 * 117.49681 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7339 1.2414 5 7 4.5823 -0.6301 1.3045 6 6 5.0764 -0.9649 2.6469 7 6 6.4529 -0.3310 2.8564 8 1 6.3976 0.7366 2.6435 9 8 7.3983 -0.9436 1.9772 10 6 6.8885 -0.5365 4.2843 11 1 6.2474 -1.0660 4.9737 12 6 8.1051 -0.0478 4.7112 13 7 8.8855 0.5974 3.8720 14 14 8.6446 -0.3020 6.4814 15 1 9.3989 -1.5765 6.5908 16 1 9.5152 0.8258 6.9004 17 1 7.4490 -0.3573 7.3603 18 6 5.2147 -1.4770 0.2843 19 6 4.8221 -2.9371 0.5188 20 6 5.9464 -3.9326 0.8117 21 6 5.2342 -3.9586 -0.5430 22 1 2.9710 1.0284 0.0112 23 1 2.9716 -0.5033 -0.8955 24 1 2.8306 -1.7839 1.1862 25 1 2.6833 -0.2844 2.1340 26 1 4.3824 -0.5823 3.3953 27 1 5.1561 -2.0475 2.7450 28 1 7.5341 -1.8870 2.1413 29 1 9.7416 0.9409 4.1722 30 1 4.8801 -1.1652 -0.7050 31 1 6.2981 -1.3771 0.3498 32 1 3.8684 -3.0923 1.0231 33 1 6.9657 -3.5474 0.8371 34 1 5.7322 -4.7430 1.5084 35 1 4.5518 -4.7861 -0.7370 36 1 5.7848 -3.5904 -1.4088 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:33 Heat of formation + Delta-G solvation = -17.248007 kcal Electronic energy + Delta-G solvation = -17179.977512 eV Core-core repulsion = 14471.319802 eV Total energy + Delta-G solvation = -2708.657709 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06184 -37.78973 -37.37964 -36.17099 -34.15078 -32.33544 -30.12698 -27.57681 -26.06647 -23.52137 -23.14025 -22.40114 -20.49689 -18.95248 -18.32823 -17.29782 -16.63165 -16.21518 -16.04766 -15.85672 -15.61795 -15.13045 -14.60679 -14.43710 -14.16599 -13.62992 -13.43481 -13.12771 -12.94475 -12.80257 -12.74542 -12.46761 -12.44338 -12.24566 -12.09823 -11.87130 -11.69225 -11.10438 -10.91281 -10.69769 -10.58641 -9.90618 -8.91489 -8.06035 -6.30273 1.43315 1.45201 1.54464 1.76569 1.84910 2.43271 2.88657 3.04932 3.20228 3.54803 3.95057 4.06338 4.16169 4.26381 4.30666 4.37301 4.52717 4.62931 4.71790 4.81318 4.90218 4.99118 5.05331 5.10985 5.17249 5.18870 5.24322 5.39194 5.64021 5.73551 5.88152 6.12943 6.37877 6.44322 6.63389 6.84008 7.42519 7.66488 8.97425 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.006432 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.678890 B = 4351.862949 C = 5087.998000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.243 3.757 3 C -0.014 4.014 4 C 0.052 3.948 5 N -0.531 5.531 6 C 0.050 3.950 7 C 0.242 3.758 8 H 0.023 0.977 9 O -0.566 6.566 10 C -0.584 4.584 11 H 0.055 0.945 12 C 0.030 3.970 13 N -0.896 5.896 14 Si 0.951 3.049 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.073 3.927 19 C -0.190 4.190 20 C -0.189 4.189 21 C -0.161 4.161 22 H 0.130 0.870 23 H 0.132 0.868 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.348 0.652 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -6.602 -7.841 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.074 4.074 3 C -0.054 4.054 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.078 4.078 7 C 0.184 3.816 8 H 0.041 0.959 9 O -0.370 6.370 10 C -0.622 4.622 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.534 5.534 14 Si 0.776 3.224 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.055 4.055 19 C -0.209 4.209 20 C -0.226 4.226 21 C -0.198 4.198 22 H 0.148 0.852 23 H 0.150 0.850 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.193 0.807 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.339 -5.372 -8.202 12.871 hybrid contribution 0.627 -1.308 1.637 2.187 sum -7.712 -6.680 -6.565 12.132 Atomic orbital electron populations 1.81232 1.14775 1.11236 1.10701 1.29580 0.95467 0.91080 0.91270 1.19356 0.78863 1.05974 1.01187 1.22098 0.88603 0.99402 0.97676 1.62107 1.04357 1.54087 1.04770 1.22651 0.97979 0.98256 0.88879 1.19121 0.83618 0.92003 0.86828 0.95904 1.86491 1.65979 1.25478 1.59004 1.22068 1.04037 1.38117 0.98020 0.92673 1.25776 0.96819 0.93868 1.00760 1.70205 1.10686 1.36355 1.36121 0.85696 0.78258 0.77701 0.80704 1.19998 1.21193 1.19234 1.22185 1.01317 0.86840 0.95155 1.23029 0.99174 0.93902 1.04806 1.23034 0.97461 1.02139 0.99994 1.22948 1.03304 1.00984 0.92584 0.85249 0.85034 0.93065 0.91098 0.92149 0.94406 0.80743 0.93162 0.89081 0.89668 0.88246 0.89366 0.89336 0.88144 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.07 18.54 20.01 0.37 -13.70 16 2 C 0.24 5.27 15.43 89.44 1.38 6.65 16 3 C -0.01 -0.23 5.66 28.79 0.16 -0.06 16 4 C 0.05 1.14 4.78 86.30 0.41 1.55 16 5 N -0.53 -15.37 4.57 -896.21 -4.10 -19.47 16 6 C 0.05 1.84 4.65 86.30 0.40 2.24 16 7 C 0.24 11.52 3.05 29.85 0.09 11.61 16 8 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 9 O -0.57 -26.61 10.01 -148.98 -1.49 -28.10 16 10 C -0.58 -30.64 8.73 25.60 0.22 -30.41 16 11 H 0.06 2.81 7.74 -2.91 -0.02 2.79 16 12 C 0.03 1.64 5.40 84.66 0.46 2.10 16 13 N -0.90 -51.98 12.84 21.45 0.28 -51.71 16 14 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 C 0.07 1.89 5.31 86.30 0.46 2.35 16 19 C -0.19 -4.37 4.08 -10.79 -0.04 -4.41 16 20 C -0.19 -4.53 10.07 30.62 0.31 -4.23 16 21 C -0.16 -3.12 10.25 30.62 0.31 -2.81 16 22 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.13 1.60 6.99 -2.39 -0.02 1.58 16 24 H 0.05 1.07 5.68 -2.38 -0.01 1.05 16 25 H 0.07 1.66 7.64 -2.39 -0.02 1.65 16 26 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 27 H 0.04 1.35 6.65 -2.39 -0.02 1.33 16 28 H 0.35 14.93 8.23 -74.05 -0.61 14.32 16 29 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.09 1.89 6.83 -2.39 -0.02 1.87 16 31 H 0.09 2.78 5.18 -2.39 -0.01 2.77 16 32 H 0.10 2.29 6.00 -2.39 -0.01 2.27 16 33 H 0.09 2.35 7.22 -2.39 -0.02 2.33 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.32 298.98 1.73 -61.60 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.48 Total: 22.50 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.16 Total: -15.43 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.45 Total: -84.88 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.49 Total: -28.10 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -63.32 1.73 -61.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.348 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds