Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00374 * 2 1 4 4 H 1.48497 * 109.47320 * 239.99889 * 3 2 1 5 5 H 1.48507 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46960 * 119.99910 * 3 2 1 7 7 C 1.37880 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46947 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47083 * 179.97438 * 10 9 7 12 12 C 1.34800 * 117.00215 * 179.97438 * 11 10 9 13 13 O 1.21541 * 119.99648 * 359.97438 * 12 11 10 14 14 C 1.46951 * 120.00147 * 179.97438 * 12 11 10 15 15 C 1.33082 * 119.99627 * 179.97438 * 14 12 11 16 16 C 1.50704 * 119.99573 * 180.02562 * 15 14 12 17 17 C 1.54892 * 110.59841 * 123.31922 * 16 15 14 18 18 C 1.54888 * 102.74611 * 156.67350 * 17 16 15 19 19 C 1.54265 * 104.19721 * 322.05788 * 18 17 16 20 20 C 1.53873 * 106.59997 * 23.61451 * 19 18 17 21 21 H 0.97003 * 119.99540 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47289 * 59.99624 * 9 7 2 23 23 H 1.08997 * 109.47033 * 299.99109 * 9 7 2 24 24 H 1.08994 * 109.47360 * 59.99757 * 10 9 7 25 25 H 1.09003 * 109.46911 * 299.99794 * 10 9 7 26 26 H 1.08001 * 119.99881 * 0.02562 * 14 12 11 27 27 H 1.08001 * 120.00492 * 0.02562 * 15 14 12 28 28 H 1.09002 * 110.43639 * 0.70213 * 16 15 14 29 29 H 1.08992 * 110.75663 * 274.99212 * 17 16 15 30 30 H 1.09000 * 110.75339 * 38.36236 * 17 16 15 31 31 H 1.09007 * 110.48520 * 203.37936 * 18 17 16 32 32 H 1.08996 * 110.48377 * 80.74349 * 18 17 16 33 33 H 1.08993 * 110.03585 * 264.31946 * 19 18 17 34 34 H 1.09006 * 110.07186 * 142.91875 * 19 18 17 35 35 H 1.09002 * 110.03017 * 240.71676 * 20 19 18 36 36 H 1.08992 * 110.03600 * 119.28231 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5190 -4.9196 0.0011 12 6 2.2531 -6.0502 0.0007 13 8 3.4668 -5.9866 -0.0007 14 6 1.5858 -7.3595 0.0018 15 6 2.3106 -8.4756 0.0009 16 6 1.6264 -9.8183 0.0014 17 6 2.0872 -10.6653 -1.2108 18 6 1.8065 -12.1145 -0.7415 19 6 2.1764 -12.1056 0.7561 20 6 2.0618 -10.6457 1.2285 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8717 -3.6045 0.8904 25 1 2.8717 -3.6044 -0.8895 26 1 0.5073 -7.4159 0.0026 27 1 3.3892 -8.4192 -0.0003 28 1 0.5435 -9.6937 -0.0098 29 1 1.4985 -10.4251 -2.0960 30 1 3.1505 -10.5201 -1.4015 31 1 2.4348 -12.8200 -1.2855 32 1 0.7529 -12.3607 -0.8729 33 1 3.1974 -12.4626 0.8907 34 1 1.4844 -12.7347 1.3161 35 1 3.0273 -10.2941 1.5923 36 1 1.3136 -10.5661 2.0171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830787216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = -105.389225 kcal Electronic energy + Delta-G solvation = -15876.032027 eV Core-core repulsion = 13131.259477 eV Total energy + Delta-G solvation = -2744.772550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81021 -38.59996 -36.10922 -33.52550 -33.29369 -30.30793 -28.98953 -28.56744 -25.22004 -23.20504 -20.94220 -20.76573 -20.25365 -19.49285 -17.45509 -16.37096 -16.15555 -15.79291 -15.62666 -15.15878 -14.49333 -13.85328 -13.69334 -13.25183 -12.89451 -12.35052 -12.09849 -12.00880 -11.58876 -11.44795 -11.38737 -11.21011 -11.02223 -10.96915 -10.74099 -10.71469 -10.68573 -10.21882 -9.63819 -9.59564 -9.43216 -9.29439 -8.42433 -6.08727 -4.13088 1.23736 3.26353 3.26745 3.31285 3.35190 3.40226 4.27605 4.36178 4.38638 4.45383 4.92563 4.98397 5.13653 5.21938 5.27649 5.28440 5.30925 5.36918 5.40926 5.56265 5.62462 5.76569 5.88089 5.97926 6.02463 6.11678 6.12790 6.30650 6.34570 6.66996 7.02297 7.58162 7.64967 7.88881 8.22244 8.30689 8.92301 9.51069 11.02851 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.080606 B = 0.003176 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.285630 B = 8813.042469 C = 8917.360619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.353 6.353 12 C 0.486 3.514 13 O -0.525 6.525 14 C -0.184 4.184 15 C -0.059 4.059 16 C -0.072 4.072 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.118 4.118 21 H 0.264 0.736 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -23.033 -0.040 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.269 6.269 12 C 0.332 3.668 13 O -0.417 6.417 14 C -0.202 4.202 15 C -0.078 4.078 16 C -0.090 4.090 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.155 4.155 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.155 0.845 27 H 0.145 0.855 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.096 -22.830 -0.032 22.926 hybrid contribution 0.531 1.098 0.029 1.220 sum 2.627 -21.732 -0.004 21.891 Atomic orbital electron populations 1.69970 1.06099 1.27081 1.49753 1.24987 0.94924 0.99382 0.94874 0.86522 0.79472 0.82454 0.78781 1.20063 1.21117 1.20068 1.20954 0.93152 0.90163 1.52247 0.92305 1.19164 0.94193 0.89026 0.98874 1.23633 0.96376 0.78842 1.00905 1.86623 1.41953 1.15751 1.82608 1.21512 0.85846 0.86334 0.73089 1.90800 1.15404 1.88662 1.46817 1.22093 1.01138 0.89458 1.07550 1.23771 1.00694 0.92943 0.90376 1.21281 1.00154 0.91548 0.96052 1.22551 1.01832 0.94060 0.96987 1.22370 1.01449 0.96711 0.95742 1.22150 1.01589 0.96479 0.96061 1.22185 1.02090 0.94271 0.96990 0.92658 0.95351 0.95342 0.92343 0.92332 0.84546 0.85462 0.89495 0.91054 0.90926 0.91543 0.91496 0.91757 0.91783 0.91234 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.08 1.74 5.42 37.16 0.20 1.94 16 11 O -0.35 -7.48 10.23 -40.76 -0.42 -7.90 16 12 C 0.49 9.05 7.91 34.26 0.27 9.32 16 13 O -0.52 -10.92 16.01 -19.30 -0.31 -11.23 16 14 C -0.18 -2.49 9.77 -37.85 -0.37 -2.86 16 15 C -0.06 -0.67 8.27 -36.10 -0.30 -0.97 16 16 C -0.07 -0.61 3.18 -90.11 -0.29 -0.89 16 17 C -0.12 -0.88 6.32 -24.74 -0.16 -1.03 16 18 C -0.13 -0.80 6.83 -25.07 -0.17 -0.97 16 19 C -0.13 -0.81 6.80 -25.61 -0.17 -0.98 16 20 C -0.12 -0.90 6.36 -25.61 -0.16 -1.06 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.14 1.58 7.90 -52.49 -0.41 1.16 16 27 H 0.13 1.53 7.49 -52.49 -0.39 1.13 16 28 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.56 7.83 -51.93 -0.41 0.15 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -31.50 307.77 -7.89 -39.39 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -5.81 Total: -4.76 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.71 Total: -10.77 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.73 Total: -19.13 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.50 -7.89 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830787216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.001 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds