Wall clock time and date at job start Sun Mar 29 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00374 * 2 1 4 4 H 1.48497 * 109.47320 * 239.99889 * 3 2 1 5 5 H 1.48507 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46960 * 119.99910 * 3 2 1 7 7 C 1.37880 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46947 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47083 * 179.97438 * 10 9 7 12 12 C 1.34800 * 117.00215 * 179.97438 * 11 10 9 13 13 O 1.21541 * 119.99648 * 359.97438 * 12 11 10 14 14 C 1.46951 * 120.00147 * 179.97438 * 12 11 10 15 15 C 1.33082 * 119.99627 * 179.97438 * 14 12 11 16 16 C 1.50704 * 119.99573 * 180.02562 * 15 14 12 17 17 C 1.54892 * 110.59841 * 123.31922 * 16 15 14 18 18 C 1.54888 * 102.74611 * 156.67350 * 17 16 15 19 19 C 1.54265 * 104.19721 * 322.05788 * 18 17 16 20 20 C 1.53873 * 106.59997 * 23.61451 * 19 18 17 21 21 H 0.97003 * 119.99540 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47289 * 59.99624 * 9 7 2 23 23 H 1.08997 * 109.47033 * 299.99109 * 9 7 2 24 24 H 1.08994 * 109.47360 * 59.99757 * 10 9 7 25 25 H 1.09003 * 109.46911 * 299.99794 * 10 9 7 26 26 H 1.08001 * 119.99881 * 0.02562 * 14 12 11 27 27 H 1.08001 * 120.00492 * 0.02562 * 15 14 12 28 28 H 1.09002 * 110.43639 * 0.70213 * 16 15 14 29 29 H 1.08992 * 110.75663 * 274.99212 * 17 16 15 30 30 H 1.09000 * 110.75339 * 38.36236 * 17 16 15 31 31 H 1.09007 * 110.48520 * 203.37936 * 18 17 16 32 32 H 1.08996 * 110.48377 * 80.74349 * 18 17 16 33 33 H 1.08993 * 110.03585 * 264.31946 * 19 18 17 34 34 H 1.09006 * 110.07186 * 142.91875 * 19 18 17 35 35 H 1.09002 * 110.03017 * 240.71676 * 20 19 18 36 36 H 1.08992 * 110.03600 * 119.28231 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5190 -4.9196 0.0011 12 6 2.2531 -6.0502 0.0007 13 8 3.4668 -5.9866 -0.0007 14 6 1.5858 -7.3595 0.0018 15 6 2.3106 -8.4756 0.0009 16 6 1.6264 -9.8183 0.0014 17 6 2.0872 -10.6653 -1.2108 18 6 1.8065 -12.1145 -0.7415 19 6 2.1764 -12.1056 0.7561 20 6 2.0618 -10.6457 1.2285 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8717 -3.6045 0.8904 25 1 2.8717 -3.6044 -0.8895 26 1 0.5073 -7.4159 0.0026 27 1 3.3892 -8.4192 -0.0003 28 1 0.5435 -9.6937 -0.0098 29 1 1.4985 -10.4251 -2.0960 30 1 3.1505 -10.5201 -1.4015 31 1 2.4348 -12.8200 -1.2855 32 1 0.7529 -12.3607 -0.8729 33 1 3.1974 -12.4626 0.8907 34 1 1.4844 -12.7347 1.3161 35 1 3.0273 -10.2941 1.5923 36 1 1.3136 -10.5661 2.0171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830787216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:56 Heat of formation + Delta-G solvation = -121.919857 kcal Electronic energy + Delta-G solvation = -15876.748849 eV Core-core repulsion = 13131.259477 eV Total energy + Delta-G solvation = -2745.489372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35304 -39.30475 -37.73973 -35.45978 -34.49556 -32.35222 -29.55090 -29.45141 -27.15691 -24.58723 -22.83837 -21.44089 -21.17239 -20.50929 -19.04706 -18.19573 -17.55367 -17.48940 -16.55820 -16.49398 -15.86100 -15.09941 -14.78747 -14.39403 -14.32886 -14.25580 -13.19649 -13.16435 -12.95440 -12.69345 -12.59567 -12.57932 -12.39095 -12.02947 -11.92821 -11.87946 -11.58318 -11.53722 -11.50677 -11.34789 -11.25795 -10.62774 -10.44527 -8.28431 -6.42261 0.07358 1.40032 1.44190 1.52041 1.80380 1.92199 2.39733 3.05696 3.53367 3.73294 3.77713 3.96225 4.08404 4.18934 4.23625 4.37300 4.56336 4.58791 4.64729 4.65865 4.68029 4.85249 4.97523 5.13150 5.13347 5.20998 5.26770 5.33206 5.38897 5.43582 5.48478 5.52616 5.54023 5.72002 6.04492 6.69084 6.73679 7.27549 8.84232 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.080606 B = 0.003176 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.285630 B = 8813.042469 C = 8917.360619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.364 6.364 12 C 0.483 3.517 13 O -0.554 6.554 14 C -0.207 4.207 15 C -0.023 4.023 16 C -0.072 4.072 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.119 4.119 21 H 0.269 0.731 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.159 0.841 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -24.156 -0.063 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.280 6.280 12 C 0.331 3.669 13 O -0.447 6.447 14 C -0.225 4.225 15 C -0.041 4.041 16 C -0.091 4.091 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.156 4.156 21 H 0.078 0.922 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.176 0.824 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.564 -23.983 -0.055 24.120 hybrid contribution 0.394 1.296 0.037 1.355 sum 2.958 -22.687 -0.018 22.879 Atomic orbital electron populations 1.70094 1.07865 1.28427 1.50232 1.25995 0.95875 1.03494 0.93957 0.85346 0.78178 0.77256 0.79345 1.19003 1.20328 1.19019 1.21352 0.93714 0.91240 1.52789 0.91683 1.18978 0.94322 0.90620 0.96682 1.23165 0.95113 0.79152 1.00906 1.86610 1.42263 1.15877 1.83297 1.22403 0.85745 0.86858 0.71859 1.90779 1.16579 1.88881 1.48501 1.22060 1.02154 0.87097 1.11227 1.24050 1.00381 0.93729 0.85977 1.21399 1.00630 0.89845 0.97190 1.22583 1.01690 0.94696 0.96593 1.22370 1.02111 0.95879 0.95586 1.22155 1.02109 0.95643 0.96239 1.22211 1.01921 0.94887 0.96627 0.92249 0.97522 0.97518 0.92283 0.92265 0.82387 0.86255 0.88276 0.90676 0.91277 0.90742 0.90786 0.91486 0.90846 0.91851 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 8 H 0.06 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C 0.09 4.27 5.42 71.98 0.39 4.66 16 11 O -0.36 -15.72 10.23 -57.11 -0.58 -16.30 16 12 C 0.48 18.08 7.91 70.10 0.55 18.63 16 13 O -0.55 -23.27 16.01 19.70 0.32 -22.96 16 14 C -0.21 -5.42 9.77 23.40 0.23 -5.19 16 15 C -0.02 -0.48 8.27 24.53 0.20 -0.28 16 16 C -0.07 -1.05 3.18 -10.46 -0.03 -1.09 16 17 C -0.12 -1.50 6.32 31.89 0.20 -1.30 16 18 C -0.12 -1.22 6.83 31.67 0.22 -1.00 16 19 C -0.12 -1.28 6.80 31.32 0.21 -1.07 16 20 C -0.12 -1.54 6.36 31.32 0.20 -1.34 16 21 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 22 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.16 3.41 7.90 -2.91 -0.02 3.39 16 27 H 0.12 2.75 7.49 -2.91 -0.02 2.73 16 28 H 0.10 1.28 7.87 -2.39 -0.02 1.26 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.06 0.90 7.83 -2.39 -0.02 0.88 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -67.85 307.77 6.10 -61.74 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.03 Total: 4.62 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 3.03 Total: -17.21 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.27 Total: -39.26 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.85 6.10 -61.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830787216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.175 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds