Wall clock time and date at job start Sun Mar 29 2020 22:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99964 * 2 1 4 4 C 1.53007 * 109.47228 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47420 * 239.99727 * 3 2 1 6 6 C 1.50706 * 109.47290 * 119.99788 * 3 2 1 7 7 O 1.20821 * 119.99819 * 5.03199 * 6 3 2 8 8 O 1.34227 * 120.00006 * 185.03557 * 6 3 2 9 9 C 1.45197 * 116.99915 * 185.10477 * 8 6 3 10 10 C 1.53003 * 109.47464 * 184.87630 * 9 8 6 11 11 C 1.50696 * 115.54712 * 296.14225 * 10 9 8 12 12 H 1.08006 * 120.00435 * 95.19759 * 11 10 9 13 13 C 1.37882 * 120.00143 * 274.92192 * 11 10 9 14 14 N 1.31520 * 119.99500 * 355.41968 * 13 11 10 15 15 Si 1.86795 * 120.00372 * 175.42360 * 13 11 10 16 16 H 1.48500 * 109.47012 * 59.99905 * 15 13 11 17 17 H 1.48498 * 109.47169 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47032 * 300.00008 * 15 13 11 19 19 C 1.53001 * 117.49540 * 81.80733 * 10 9 8 20 20 C 1.52995 * 117.49910 * 150.46829 * 10 9 8 21 21 H 1.07999 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.00012 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00115 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47357 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.46571 * 300.00215 * 4 3 2 26 26 H 1.09006 * 109.46631 * 59.99781 * 4 3 2 27 27 H 1.08998 * 109.46891 * 304.87453 * 5 3 2 28 28 H 1.09007 * 109.47127 * 64.86894 * 5 3 2 29 29 H 1.08992 * 109.47442 * 184.87076 * 5 3 2 30 30 H 1.09001 * 109.47077 * 64.87422 * 9 8 6 31 31 H 1.09006 * 109.47509 * 304.87636 * 9 8 6 32 32 H 0.97000 * 119.99659 * 185.00470 * 14 13 11 33 33 H 1.09001 * 117.49327 * 215.00361 * 19 10 9 34 34 H 1.08989 * 117.50109 * 0.02562 * 19 10 9 35 35 H 1.09000 * 117.50131 * 359.97438 * 20 10 9 36 36 H 1.09006 * 117.49594 * 144.97917 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2491 6 6 2.9299 1.3850 1.2305 7 8 3.0051 0.4394 1.9788 8 8 3.6179 2.5067 1.4952 9 6 4.5191 2.4742 2.6332 10 6 5.1173 3.8656 2.8501 11 6 5.9866 4.3808 1.7321 12 1 5.5650 5.0208 0.9712 13 6 7.3217 4.0397 1.6837 14 7 7.8573 3.3400 2.6601 15 14 8.3696 4.5714 0.2317 16 1 8.3746 6.0537 0.1413 17 1 9.7594 4.0828 0.4190 18 1 7.8081 4.0011 -1.0191 19 6 4.2728 4.8860 3.6159 20 6 5.4997 4.2552 4.2793 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.6141 3.4120 -0.0002 25 1 0.4429 2.4100 -0.8909 26 1 0.4422 2.4104 0.8892 27 1 3.5922 0.5116 -1.2938 28 1 2.3115 1.4156 -2.1371 29 1 3.5523 2.2890 -1.2066 30 1 5.3202 1.7601 2.4419 31 1 3.9686 2.1724 3.5243 32 1 8.8109 3.1619 2.6627 33 1 4.3461 5.9299 3.3112 34 1 3.2914 4.5659 3.9656 35 1 5.3247 3.5204 5.0652 36 1 6.3803 4.8840 4.4110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:44 Heat of formation + Delta-G solvation = -50.936070 kcal Electronic energy + Delta-G solvation = -17369.026449 eV Core-core repulsion = 14626.615164 eV Total energy + Delta-G solvation = -2742.411284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12042 -37.23047 -36.17495 -35.17715 -31.94921 -30.89793 -27.34251 -26.94513 -25.30856 -23.87609 -21.32984 -20.92326 -19.26747 -18.27951 -16.77752 -16.59568 -15.98716 -15.45805 -14.76861 -14.60960 -14.08026 -13.86871 -13.20412 -12.70648 -12.60500 -12.13270 -11.97458 -11.75772 -11.72387 -11.54365 -11.11940 -10.94434 -10.89681 -10.69896 -10.54900 -10.25801 -9.90562 -9.85052 -9.55164 -9.33703 -8.90832 -8.45087 -8.19547 -6.05119 -4.12394 2.20173 2.76353 3.29419 3.34625 3.36934 3.48254 4.38370 4.62789 4.88610 5.04286 5.18365 5.23266 5.37910 5.45379 5.65565 5.71373 5.86884 5.88927 5.95159 5.98701 6.23976 6.27232 6.30917 6.32750 6.52687 6.57318 6.69255 6.73163 6.76705 7.05663 7.23290 7.36892 7.52492 7.86468 8.36058 8.46867 8.88923 9.53138 11.02724 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.007277 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.635039 B = 3847.069863 C = 4344.810167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.029 4.029 4 C -0.143 4.143 5 C -0.138 4.138 6 C 0.464 3.536 7 O -0.522 6.522 8 O -0.332 6.332 9 C 0.115 3.885 10 C 0.034 3.966 11 C -0.487 4.487 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.883 5.883 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.206 4.206 20 C -0.140 4.140 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -2.821 -5.485 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.143 4.143 3 C -0.030 4.030 4 C -0.200 4.200 5 C -0.195 4.195 6 C 0.307 3.693 7 O -0.412 6.412 8 O -0.247 6.247 9 C 0.042 3.958 10 C 0.034 3.966 11 C -0.525 4.525 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.520 5.520 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.244 4.244 20 C -0.177 4.177 21 H 0.122 0.878 22 H 0.117 0.883 23 H 0.132 0.868 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.791 -3.201 -5.190 12.394 hybrid contribution 0.781 0.001 -0.471 0.912 sum -10.010 -3.200 -5.661 11.936 Atomic orbital electron populations 1.23961 0.95771 1.02209 1.01234 1.22617 0.95711 0.96770 0.99195 1.19553 0.94990 0.95784 0.92702 1.21934 0.98332 0.97467 1.02269 1.21813 0.99222 1.03847 0.94638 1.23371 0.78652 0.81146 0.86159 1.90591 1.63298 1.38370 1.48903 1.86524 1.52094 1.36310 1.49762 1.22892 0.89049 1.00428 0.83435 1.18779 0.96318 0.88848 0.92669 1.20346 0.93132 1.30387 1.08628 0.91949 1.25021 0.97930 0.94502 0.96038 1.69982 1.11900 1.38674 1.31448 0.86651 0.79227 0.78941 0.83179 1.20185 1.21295 1.20057 1.23006 0.93965 0.99204 1.08187 1.22518 0.97238 1.02359 0.95590 0.87751 0.88259 0.86751 0.90350 0.91254 0.92074 0.92034 0.91282 0.90200 0.91160 0.94174 0.92846 0.90096 0.91681 0.91816 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 13.70 29.02 0.40 -1.77 16 2 C -0.12 -1.67 8.01 -36.03 -0.29 -1.96 16 3 C -0.03 -0.43 0.93 -156.81 -0.15 -0.58 16 4 C -0.14 -1.79 7.02 37.16 0.26 -1.53 16 5 C -0.14 -1.86 8.43 37.16 0.31 -1.55 16 6 C 0.46 9.14 6.55 36.01 0.24 9.37 16 7 O -0.52 -11.52 15.70 -18.75 -0.29 -11.81 16 8 O -0.33 -7.31 9.85 -39.25 -0.39 -7.69 16 9 C 0.12 2.76 5.38 37.16 0.20 2.96 16 10 C 0.03 0.86 1.70 -155.66 -0.26 0.59 16 11 C -0.49 -13.21 8.75 -34.44 -0.30 -13.51 16 12 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 13 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 14 N -0.88 -24.87 12.65 55.43 0.70 -24.17 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 20 C -0.14 -3.28 9.15 -26.69 -0.24 -3.53 16 21 H 0.10 1.04 5.69 -52.49 -0.30 0.74 16 22 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 23 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 24 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 25 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 26 H 0.06 0.75 7.50 -51.93 -0.39 0.37 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 30 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 31 H 0.04 0.92 7.93 -51.93 -0.41 0.51 16 32 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.06 1.31 8.14 -51.94 -0.42 0.89 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.09 2.25 8.14 -51.93 -0.42 1.83 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -29.60 308.07 -6.24 -35.84 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.68 Total: 1.82 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.20 Total: -14.55 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.70 Total: -24.17 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.68 Total: -19.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.60 -6.24 -35.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.100 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds