Wall clock time and date at job start Sun Mar 29 2020 22:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99964 * 2 1 4 4 C 1.53007 * 109.47228 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47420 * 239.99727 * 3 2 1 6 6 C 1.50706 * 109.47290 * 119.99788 * 3 2 1 7 7 O 1.20821 * 119.99819 * 5.03199 * 6 3 2 8 8 O 1.34227 * 120.00006 * 185.03557 * 6 3 2 9 9 C 1.45197 * 116.99915 * 185.10477 * 8 6 3 10 10 C 1.53003 * 109.47464 * 184.87630 * 9 8 6 11 11 C 1.50696 * 115.54712 * 296.14225 * 10 9 8 12 12 H 1.08006 * 120.00435 * 95.19759 * 11 10 9 13 13 C 1.37882 * 120.00143 * 274.92192 * 11 10 9 14 14 N 1.31520 * 119.99500 * 355.41968 * 13 11 10 15 15 Si 1.86795 * 120.00372 * 175.42360 * 13 11 10 16 16 H 1.48500 * 109.47012 * 59.99905 * 15 13 11 17 17 H 1.48498 * 109.47169 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47032 * 300.00008 * 15 13 11 19 19 C 1.53001 * 117.49540 * 81.80733 * 10 9 8 20 20 C 1.52995 * 117.49910 * 150.46829 * 10 9 8 21 21 H 1.07999 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.00012 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.00115 * 179.97438 * 2 1 3 24 24 H 1.08992 * 109.47357 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.46571 * 300.00215 * 4 3 2 26 26 H 1.09006 * 109.46631 * 59.99781 * 4 3 2 27 27 H 1.08998 * 109.46891 * 304.87453 * 5 3 2 28 28 H 1.09007 * 109.47127 * 64.86894 * 5 3 2 29 29 H 1.08992 * 109.47442 * 184.87076 * 5 3 2 30 30 H 1.09001 * 109.47077 * 64.87422 * 9 8 6 31 31 H 1.09006 * 109.47509 * 304.87636 * 9 8 6 32 32 H 0.97000 * 119.99659 * 185.00470 * 14 13 11 33 33 H 1.09001 * 117.49327 * 215.00361 * 19 10 9 34 34 H 1.08989 * 117.50109 * 0.02562 * 19 10 9 35 35 H 1.09000 * 117.50131 * 359.97438 * 20 10 9 36 36 H 1.09006 * 117.49594 * 144.97917 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2491 6 6 2.9299 1.3850 1.2305 7 8 3.0051 0.4394 1.9788 8 8 3.6179 2.5067 1.4952 9 6 4.5191 2.4742 2.6332 10 6 5.1173 3.8656 2.8501 11 6 5.9866 4.3808 1.7321 12 1 5.5650 5.0208 0.9712 13 6 7.3217 4.0397 1.6837 14 7 7.8573 3.3400 2.6601 15 14 8.3696 4.5714 0.2317 16 1 8.3746 6.0537 0.1413 17 1 9.7594 4.0828 0.4190 18 1 7.8081 4.0011 -1.0191 19 6 4.2728 4.8860 3.6159 20 6 5.4997 4.2552 4.2793 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.6141 3.4120 -0.0002 25 1 0.4429 2.4100 -0.8909 26 1 0.4422 2.4104 0.8892 27 1 3.5922 0.5116 -1.2938 28 1 2.3115 1.4156 -2.1371 29 1 3.5523 2.2890 -1.2066 30 1 5.3202 1.7601 2.4419 31 1 3.9686 2.1724 3.5243 32 1 8.8109 3.1619 2.6627 33 1 4.3461 5.9299 3.3112 34 1 3.2914 4.5659 3.9656 35 1 5.3247 3.5204 5.0652 36 1 6.3803 4.8840 4.4110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:44 Heat of formation + Delta-G solvation = -66.092419 kcal Electronic energy + Delta-G solvation = -17369.683677 eV Core-core repulsion = 14626.615164 eV Total energy + Delta-G solvation = -2743.068513 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67870 -38.86388 -37.61058 -36.89365 -34.01598 -31.91529 -28.82022 -28.31201 -27.34028 -25.15676 -23.02997 -22.40076 -21.21451 -19.51672 -18.54494 -18.06582 -17.56157 -17.21226 -16.55356 -16.00621 -15.64216 -15.23539 -14.81215 -14.21945 -14.06936 -13.62489 -13.35906 -13.24910 -13.06151 -12.88116 -12.81335 -12.67559 -12.41316 -12.17927 -12.09353 -11.73850 -11.67402 -11.56265 -11.21363 -10.88629 -10.48326 -10.40388 -10.08297 -8.12260 -6.25513 1.17255 1.20691 1.42072 1.43909 1.51091 2.01990 2.41922 3.14610 3.39746 3.55354 3.77284 3.93041 4.04155 4.11160 4.34996 4.42982 4.44302 4.63640 4.72487 4.73080 4.78733 4.83068 4.91307 4.95448 5.01320 5.16986 5.21836 5.32819 5.41326 5.57447 5.64898 5.71169 5.75338 5.80024 6.34872 6.79370 6.81541 7.43040 8.95123 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.007277 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.635039 B = 3847.069863 C = 4344.810167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.158 4.158 3 C -0.024 4.024 4 C -0.140 4.140 5 C -0.136 4.136 6 C 0.456 3.544 7 O -0.551 6.551 8 O -0.340 6.340 9 C 0.128 3.872 10 C 0.002 3.998 11 C -0.501 4.501 12 H 0.057 0.943 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.178 4.178 20 C -0.142 4.142 21 H 0.121 0.879 22 H 0.119 0.881 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.261 0.739 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -2.417 -6.815 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.025 4.025 4 C -0.197 4.197 5 C -0.193 4.193 6 C 0.301 3.699 7 O -0.442 6.442 8 O -0.255 6.255 9 C 0.054 3.946 10 C 0.002 3.998 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.178 4.178 14 N -0.550 5.550 15 Si 0.777 3.223 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.215 4.215 20 C -0.180 4.180 21 H 0.139 0.861 22 H 0.137 0.863 23 H 0.122 0.878 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.760 -2.787 -6.530 14.602 hybrid contribution 1.295 -0.172 -0.049 1.307 sum -11.465 -2.960 -6.578 13.545 Atomic orbital electron populations 1.24265 0.94815 1.03971 0.97110 1.22512 0.96562 0.95569 1.02950 1.19722 0.94813 0.97811 0.90133 1.21972 0.97964 0.95650 1.04105 1.21840 0.99435 1.02507 0.95555 1.24611 0.78181 0.79864 0.87282 1.90563 1.64273 1.39058 1.50339 1.86541 1.52085 1.37818 1.49056 1.22495 0.88592 0.99125 0.84404 1.18886 0.97988 0.90066 0.92876 1.20601 0.93791 1.30297 1.09205 0.92492 1.25741 0.99139 0.94644 0.98313 1.70094 1.12014 1.39759 1.33116 0.85704 0.77514 0.78942 0.80121 1.19221 1.21122 1.19631 1.23010 0.94241 0.98720 1.05547 1.22435 0.97553 1.02651 0.95316 0.86076 0.86296 0.87818 0.91518 0.87741 0.91818 0.92827 0.87746 0.92046 0.94600 0.93656 0.92980 0.89504 0.89334 0.90762 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 13.70 67.78 0.93 -2.15 16 2 C -0.16 -3.94 8.01 25.65 0.21 -3.73 16 3 C -0.02 -0.67 0.93 -53.67 -0.05 -0.72 16 4 C -0.14 -3.14 7.02 71.98 0.51 -2.64 16 5 C -0.14 -3.51 8.43 71.98 0.61 -2.90 16 6 C 0.46 18.06 6.55 71.24 0.47 18.53 16 7 O -0.55 -24.79 15.70 21.98 0.35 -24.44 16 8 O -0.34 -15.16 9.85 -51.39 -0.51 -15.67 16 9 C 0.13 6.27 5.38 71.98 0.39 6.66 16 10 C 0.00 0.11 1.70 -52.93 -0.09 0.02 16 11 C -0.50 -27.48 8.75 25.60 0.22 -27.26 16 12 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 13 C 0.02 1.19 5.43 84.65 0.46 1.65 16 14 N -0.91 -52.45 12.65 21.45 0.27 -52.18 16 15 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C -0.18 -7.64 9.96 30.62 0.30 -7.33 16 20 C -0.14 -6.71 9.15 30.62 0.28 -6.43 16 21 H 0.12 1.86 5.69 -2.91 -0.02 1.84 16 22 H 0.12 1.77 8.06 -2.91 -0.02 1.75 16 23 H 0.10 2.76 8.06 -2.91 -0.02 2.74 16 24 H 0.07 1.67 8.03 -2.39 -0.02 1.65 16 25 H 0.10 1.61 7.50 -2.39 -0.02 1.59 16 26 H 0.06 1.39 7.50 -2.38 -0.02 1.37 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 2.12 7.93 -2.38 -0.02 2.11 16 32 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 33 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 3.64 8.14 -2.38 -0.02 3.62 16 Total: -1.00 -64.52 308.07 7.40 -57.12 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.03 Total: 16.21 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: 4.23 Total: -26.29 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.27 Total: -52.18 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.16 Total: -40.11 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.52 7.40 -57.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.969 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds