Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00468 * 2 1 4 4 H 1.48493 * 109.47194 * 239.99896 * 3 2 1 5 5 H 1.48503 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46879 * 119.99862 * 3 2 1 7 7 C 1.37880 * 119.99305 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00328 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47340 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99850 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00361 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99943 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47274 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.43288 * 52.46365 * 15 14 12 17 17 C 1.54886 * 110.48601 * 289.77375 * 15 14 12 18 18 C 1.54887 * 102.74649 * 203.37944 * 17 15 14 19 19 C 1.54269 * 104.19647 * 37.94403 * 18 17 15 20 20 H 1.08998 * 117.75895 * 116.74926 * 19 18 17 21 21 C 1.53001 * 118.19506 * 272.20715 * 19 18 17 22 22 C 1.53006 * 60.37447 * 93.61780 * 21 19 18 23 23 H 1.08999 * 119.29459 * 112.23856 * 22 21 19 24 24 H 0.97005 * 119.99220 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47348 * 59.99886 * 9 7 2 26 26 H 1.09002 * 109.47071 * 299.99536 * 9 7 2 27 27 H 1.09003 * 109.47195 * 59.99938 * 10 9 7 28 28 H 1.09001 * 109.47379 * 299.99982 * 10 9 7 29 29 H 1.09002 * 109.46908 * 59.99422 * 14 12 11 30 30 H 1.09007 * 109.46839 * 300.00338 * 14 12 11 31 31 H 1.09006 * 110.75606 * 321.69403 * 17 15 14 32 32 H 1.09000 * 110.75439 * 85.06098 * 17 15 14 33 33 H 1.09006 * 110.48424 * 156.61890 * 18 17 15 34 34 H 1.08994 * 110.48763 * 279.12824 * 18 17 15 35 35 H 1.08995 * 117.46343 * 346.02337 * 21 19 18 36 36 H 1.08997 * 117.45866 * 201.21219 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 8 1.5189 -4.9196 0.0011 12 6 2.2499 -6.0454 0.0018 13 8 3.4565 -5.9823 0.0013 14 6 1.5657 -7.3881 0.0018 15 6 2.6193 -8.4975 0.0019 16 1 3.3326 -8.3448 0.8119 17 6 3.3486 -8.5526 -1.3634 18 6 3.8759 -10.0081 -1.4107 19 6 2.7462 -10.8408 -0.7701 20 1 2.2460 -11.5821 -1.3933 21 6 2.7542 -11.0224 0.7490 22 6 1.9472 -9.8803 0.1280 23 1 0.8588 -9.9065 0.1800 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.9432 -7.4787 -0.8884 30 1 0.9424 -7.4782 0.8916 31 1 2.6520 -8.3673 -2.1811 32 1 4.1742 -7.8415 -1.3893 33 1 4.0423 -10.3203 -2.4417 34 1 4.7952 -10.0998 -0.8322 35 1 3.6682 -10.7602 1.2818 36 1 2.1983 -11.8664 1.1573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835269815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -87.689415 kcal Electronic energy + Delta-G solvation = -16414.614862 eV Core-core repulsion = 13670.609833 eV Total energy + Delta-G solvation = -2744.005029 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32470 -39.26124 -36.10594 -33.34612 -32.83916 -30.76026 -30.10283 -26.23813 -24.64319 -22.89998 -21.21953 -20.63295 -20.19756 -19.59201 -17.24517 -16.25832 -16.16753 -16.06358 -15.52991 -14.76199 -14.40967 -13.99525 -13.32199 -13.01169 -12.99278 -12.57207 -12.35416 -12.06034 -11.41920 -11.26227 -11.20328 -11.03231 -10.86761 -10.80115 -10.70190 -10.65003 -10.30941 -10.10157 -9.80344 -9.61586 -9.57174 -9.29974 -8.43643 -6.09909 -4.14338 2.64055 3.21210 3.30368 3.34364 3.38587 3.45295 4.32259 4.41278 4.48758 4.57332 4.93926 4.99170 5.15360 5.21771 5.26499 5.32854 5.35020 5.43139 5.55664 5.60370 5.72219 5.78629 5.86087 6.00346 6.06230 6.11365 6.11551 6.18916 6.33871 6.65689 7.06092 7.57048 7.63374 7.87720 8.21553 8.30927 8.91085 9.49957 11.01600 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.070424 B = 0.003693 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.497241 B = 7579.178771 C = 7769.498070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.360 6.360 12 C 0.454 3.546 13 O -0.518 6.518 14 C -0.108 4.108 15 C -0.051 4.051 16 H 0.085 0.915 17 C -0.119 4.119 18 C -0.096 4.096 19 C -0.166 4.166 20 H 0.108 0.892 21 C -0.156 4.156 22 C -0.162 4.162 23 H 0.113 0.887 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -20.460 -0.852 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.276 6.276 12 C 0.297 3.703 13 O -0.408 6.408 14 C -0.145 4.145 15 C -0.070 4.070 16 H 0.103 0.897 17 C -0.157 4.157 18 C -0.133 4.133 19 C -0.184 4.184 20 H 0.126 0.874 21 C -0.193 4.193 22 C -0.180 4.180 23 H 0.131 0.869 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.439 -20.251 -0.863 20.559 hybrid contribution 0.432 0.980 0.017 1.071 sum 3.870 -19.271 -0.846 19.674 Atomic orbital electron populations 1.69970 1.06096 1.27084 1.49729 1.24986 0.94923 0.99382 0.94860 0.86526 0.79482 0.82464 0.78788 1.20060 1.21113 1.20063 1.20954 0.93144 0.90184 1.52278 0.92326 1.19160 0.94198 0.89084 0.98827 1.23608 0.96317 0.78969 1.00831 1.86528 1.42526 1.15918 1.82607 1.23571 0.86662 0.87384 0.72667 1.90604 1.15867 1.88359 1.45959 1.21393 0.99065 0.88402 1.05658 1.21403 0.95771 0.90660 0.99139 0.89667 1.22792 1.00419 0.96299 0.96165 1.21948 0.96814 0.94212 1.00352 1.23267 1.00817 1.01813 0.92494 0.87421 1.23065 1.02033 0.99473 0.94682 1.23240 0.98283 0.90407 1.06038 0.86932 0.92657 0.95397 0.95385 0.92420 0.92407 0.87861 0.87835 0.91414 0.90134 0.91320 0.91471 0.88995 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.71 5.40 37.16 0.20 1.91 16 11 O -0.36 -7.27 10.22 -39.26 -0.40 -7.68 16 12 C 0.45 7.83 7.77 36.00 0.28 8.11 16 13 O -0.52 -10.05 14.48 -18.75 -0.27 -10.32 16 14 C -0.11 -1.30 5.29 -27.88 -0.15 -1.45 16 15 C -0.05 -0.58 2.24 -88.96 -0.20 -0.78 16 16 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 17 C -0.12 -1.35 5.75 -24.74 -0.14 -1.49 16 18 C -0.10 -0.90 6.62 -25.07 -0.17 -1.07 16 19 C -0.17 -1.44 6.94 -89.50 -0.62 -2.06 16 20 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.16 -1.29 10.07 -26.73 -0.27 -1.56 16 22 C -0.16 -1.49 6.36 -89.50 -0.57 -2.05 16 23 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 29 H 0.10 1.10 8.02 -51.93 -0.42 0.68 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 32 H 0.08 1.06 7.29 -51.93 -0.38 0.69 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -30.82 301.90 -8.41 -39.23 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.80 Total: -2.84 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.19 Total: -13.62 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.67 Total: -18.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.82 -8.41 -39.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835269815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.462 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds