Wall clock time and date at job start Sun Mar 29 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00468 * 2 1 4 4 H 1.48493 * 109.47194 * 239.99896 * 3 2 1 5 5 H 1.48503 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46879 * 119.99862 * 3 2 1 7 7 C 1.37880 * 119.99305 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00328 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47340 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47302 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99850 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00361 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99943 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47274 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.43288 * 52.46365 * 15 14 12 17 17 C 1.54886 * 110.48601 * 289.77375 * 15 14 12 18 18 C 1.54887 * 102.74649 * 203.37944 * 17 15 14 19 19 C 1.54269 * 104.19647 * 37.94403 * 18 17 15 20 20 H 1.08998 * 117.75895 * 116.74926 * 19 18 17 21 21 C 1.53001 * 118.19506 * 272.20715 * 19 18 17 22 22 C 1.53006 * 60.37447 * 93.61780 * 21 19 18 23 23 H 1.08999 * 119.29459 * 112.23856 * 22 21 19 24 24 H 0.97005 * 119.99220 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47348 * 59.99886 * 9 7 2 26 26 H 1.09002 * 109.47071 * 299.99536 * 9 7 2 27 27 H 1.09003 * 109.47195 * 59.99938 * 10 9 7 28 28 H 1.09001 * 109.47379 * 299.99982 * 10 9 7 29 29 H 1.09002 * 109.46908 * 59.99422 * 14 12 11 30 30 H 1.09007 * 109.46839 * 300.00338 * 14 12 11 31 31 H 1.09006 * 110.75606 * 321.69403 * 17 15 14 32 32 H 1.09000 * 110.75439 * 85.06098 * 17 15 14 33 33 H 1.09006 * 110.48424 * 156.61890 * 18 17 15 34 34 H 1.08994 * 110.48763 * 279.12824 * 18 17 15 35 35 H 1.08995 * 117.46343 * 346.02337 * 21 19 18 36 36 H 1.08997 * 117.45866 * 201.21219 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2844 2.7465 0.0006 6 1 3.1031 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 8 1.5189 -4.9196 0.0011 12 6 2.2499 -6.0454 0.0018 13 8 3.4565 -5.9823 0.0013 14 6 1.5657 -7.3881 0.0018 15 6 2.6193 -8.4975 0.0019 16 1 3.3326 -8.3448 0.8119 17 6 3.3486 -8.5526 -1.3634 18 6 3.8759 -10.0081 -1.4107 19 6 2.7462 -10.8408 -0.7701 20 1 2.2460 -11.5821 -1.3933 21 6 2.7542 -11.0224 0.7490 22 6 1.9472 -9.8803 0.1280 23 1 0.8588 -9.9065 0.1800 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 0.9432 -7.4787 -0.8884 30 1 0.9424 -7.4782 0.8916 31 1 2.6520 -8.3673 -2.1811 32 1 4.1742 -7.8415 -1.3893 33 1 4.0423 -10.3203 -2.4417 34 1 4.7952 -10.0998 -0.8322 35 1 3.6682 -10.7602 1.2818 36 1 2.1983 -11.8664 1.1573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835269815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:52 Heat of formation + Delta-G solvation = -103.521446 kcal Electronic energy + Delta-G solvation = -16415.301391 eV Core-core repulsion = 13670.609833 eV Total energy + Delta-G solvation = -2744.691557 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.60665 -40.27021 -37.69030 -35.45668 -33.81754 -32.35858 -31.38089 -27.63738 -26.31659 -23.72668 -23.03009 -21.94235 -21.17065 -20.39743 -18.91517 -18.06689 -17.64822 -17.38299 -16.57099 -16.49189 -15.72802 -15.32343 -14.42555 -14.36734 -14.24209 -13.96991 -13.69753 -13.23117 -13.03447 -12.90478 -12.59598 -12.55879 -12.20552 -12.06947 -11.89088 -11.71566 -11.60918 -11.51151 -11.44995 -11.25605 -10.91675 -10.62034 -10.52106 -8.28166 -6.41790 1.23638 1.40167 1.43998 1.51891 1.80926 2.39706 2.75859 3.06009 3.51106 3.61971 3.80230 3.90893 4.19754 4.23888 4.25431 4.29364 4.37689 4.49133 4.53333 4.61403 4.66177 4.70659 4.85273 4.95459 4.97674 5.09856 5.19065 5.26708 5.34509 5.37137 5.45045 5.51565 5.59556 5.75161 6.05329 6.70725 6.79693 7.28068 8.84298 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.070424 B = 0.003693 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.497241 B = 7579.178771 C = 7769.498070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.369 6.369 12 C 0.450 3.550 13 O -0.542 6.542 14 C -0.098 4.098 15 C -0.051 4.051 16 H 0.066 0.934 17 C -0.123 4.123 18 C -0.095 4.095 19 C -0.164 4.164 20 H 0.124 0.876 21 C -0.152 4.152 22 C -0.164 4.164 23 H 0.129 0.871 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -21.495 -0.907 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.286 6.286 12 C 0.295 3.705 13 O -0.432 6.432 14 C -0.135 4.135 15 C -0.070 4.070 16 H 0.085 0.915 17 C -0.161 4.161 18 C -0.132 4.132 19 C -0.182 4.182 20 H 0.142 0.858 21 C -0.189 4.189 22 C -0.182 4.182 23 H 0.147 0.853 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.542 -21.315 -0.917 21.627 hybrid contribution 0.406 1.232 0.034 1.297 sum 3.948 -20.083 -0.884 20.487 Atomic orbital electron populations 1.70091 1.07822 1.28387 1.50248 1.25976 0.95863 1.03435 0.93991 0.85368 0.78198 0.77371 0.79320 1.19040 1.20356 1.19060 1.21359 0.93684 0.91341 1.52743 0.91780 1.18974 0.94345 0.90678 0.96655 1.23105 0.94997 0.79427 1.00726 1.86526 1.42825 1.15964 1.83263 1.24656 0.86638 0.87882 0.71316 1.90598 1.17121 1.88542 1.46975 1.21572 0.99314 0.84919 1.07711 1.21369 0.95380 0.91810 0.98393 0.91519 1.22785 0.99735 0.97040 0.96512 1.21931 0.97017 0.93091 1.01201 1.23328 1.00177 1.01759 0.92909 0.85826 1.23160 1.01795 0.99503 0.94432 1.23202 0.99067 0.88954 1.06990 0.85271 0.92276 0.97533 0.97534 0.92474 0.92436 0.85667 0.85548 0.90962 0.92860 0.90202 0.91911 0.89644 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.19 5.40 71.98 0.39 4.58 16 11 O -0.37 -15.01 10.22 -51.44 -0.53 -15.54 16 12 C 0.45 15.40 7.77 71.24 0.55 15.95 16 13 O -0.54 -21.25 14.48 21.97 0.32 -20.93 16 14 C -0.10 -2.21 5.29 29.85 0.16 -2.05 16 15 C -0.05 -1.09 2.24 -9.72 -0.02 -1.11 16 16 H 0.07 1.67 7.90 -2.39 -0.02 1.65 16 17 C -0.12 -2.71 5.75 31.88 0.18 -2.53 16 18 C -0.09 -1.66 6.62 31.67 0.21 -1.45 16 19 C -0.16 -2.42 6.94 -10.07 -0.07 -2.49 16 20 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.15 -2.14 10.07 30.60 0.31 -1.83 16 22 C -0.16 -2.59 6.36 -10.07 -0.06 -2.65 16 23 H 0.13 1.64 8.05 -2.39 -0.02 1.63 16 24 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 28 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 29 H 0.13 2.34 8.02 -2.39 -0.02 2.32 16 30 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.07 1.50 7.97 -2.38 -0.02 1.48 16 32 H 0.05 1.45 7.29 -2.39 -0.02 1.43 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.60 301.90 5.64 -60.95 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.04 Total: 7.75 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 2.50 Total: -22.55 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.28 Total: -55.59 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.21 Total: -36.47 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.60 5.64 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835269815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds