Wall clock time and date at job start Sun Mar 29 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 C 1.50704 * 119.99652 * 263.56120 * 3 2 1 5 5 C 1.33081 * 120.00532 * 83.56175 * 3 2 1 6 6 C 1.46953 * 119.99492 * 353.94852 * 5 3 2 7 7 O 1.21531 * 120.00240 * 1.92183 * 6 5 3 8 8 O 1.34800 * 119.99395 * 181.92583 * 6 5 3 9 9 C 1.45206 * 116.99808 * 182.65050 * 8 6 5 10 10 C 1.50692 * 112.85154 * 294.72834 * 9 8 6 11 11 H 1.08004 * 120.00077 * 114.68306 * 10 9 8 12 12 C 1.37879 * 120.00041 * 294.68113 * 10 9 8 13 13 N 1.31508 * 119.99940 * 0.20774 * 12 10 9 14 14 Si 1.86811 * 120.00000 * 180.20786 * 12 10 9 15 15 H 1.48499 * 109.46781 * 179.97438 * 14 12 10 16 16 H 1.48492 * 109.47076 * 300.00269 * 14 12 10 17 17 H 1.48506 * 109.46769 * 59.99979 * 14 12 10 18 18 C 1.53782 * 113.60866 * 65.92210 * 9 8 6 19 19 C 1.53959 * 87.02065 * 89.22827 * 18 9 8 20 20 C 1.53778 * 113.61302 * 163.52478 * 9 8 6 21 21 H 1.09003 * 109.46985 * 300.00056 * 1 2 3 22 22 H 1.08998 * 109.47223 * 60.00324 * 1 2 3 23 23 H 1.09005 * 109.47564 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47197 * 239.99866 * 2 1 3 25 25 H 1.09001 * 109.46744 * 119.99864 * 2 1 3 26 26 H 1.09009 * 109.47030 * 269.99896 * 4 3 2 27 27 H 1.09001 * 109.47219 * 30.00179 * 4 3 2 28 28 H 1.08999 * 109.47049 * 150.00058 * 4 3 2 29 29 H 1.07995 * 120.00418 * 173.94672 * 5 3 2 30 30 H 0.96998 * 120.00101 * 1.16905 * 13 12 10 31 31 H 1.09000 * 113.61131 * 203.74728 * 18 9 8 32 32 H 1.08998 * 113.61668 * 334.65569 * 18 9 8 33 33 H 1.08994 * 113.53629 * 270.81219 * 19 18 9 34 34 H 1.08999 * 113.74057 * 139.93800 * 19 18 9 35 35 H 1.08998 * 113.61555 * 25.36008 * 20 9 8 36 36 H 1.09004 * 113.61176 * 156.17131 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4214 2.0823 -1.2970 5 6 2.1323 2.0913 1.1452 6 6 1.6295 1.4962 2.3912 7 8 1.1543 0.3777 2.3820 8 8 1.6955 2.1911 3.5444 9 6 1.2349 1.5190 4.7463 10 6 -0.2411 1.2165 4.7185 11 1 -0.5822 0.1919 4.7030 12 6 -1.1562 2.2479 4.7129 13 7 -0.7408 3.4956 4.7277 14 14 -2.9860 1.8729 4.6843 15 1 -3.7520 3.1451 4.6832 16 1 -3.3131 1.0964 3.4616 17 1 -3.3474 1.0791 5.8862 18 6 2.1028 0.3154 5.1500 19 6 2.9530 1.3049 5.9675 20 6 1.7010 2.1944 6.0469 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.4781 1.9015 -1.4944 27 1 1.8240 1.6687 -2.1094 28 1 2.2437 3.1554 -1.2251 29 1 2.5829 3.0727 1.1588 30 1 0.2094 3.6904 4.7254 31 1 1.5762 -0.4170 5.7618 32 1 2.6389 -0.1360 4.3151 33 1 3.7695 1.7501 5.3992 34 1 3.2731 0.9145 6.9336 35 1 1.9129 3.2577 5.9350 36 1 1.0635 1.9778 6.9041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835400220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:11 Heat of formation + Delta-G solvation = -58.948147 kcal Electronic energy + Delta-G solvation = -17931.486833 eV Core-core repulsion = 15188.728119 eV Total energy + Delta-G solvation = -2742.758714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59419 -37.72541 -35.47970 -33.97486 -32.35951 -30.56306 -28.02318 -25.92211 -24.70538 -23.59896 -22.62500 -21.14147 -18.44726 -17.97258 -17.37609 -16.10061 -15.15270 -14.71417 -14.45847 -13.98780 -13.72666 -13.49678 -13.41776 -12.72972 -12.52657 -12.33327 -12.28369 -11.73773 -11.59102 -11.37796 -10.86431 -10.75679 -10.67245 -10.37655 -10.32469 -10.06185 -10.04320 -9.90445 -9.13964 -8.81152 -8.76899 -8.44131 -8.06573 -6.35671 -4.13679 1.75832 3.43140 3.46044 3.64451 3.88115 4.03113 4.51978 4.99735 5.15118 5.36166 5.49233 5.54824 5.59051 5.66178 5.71705 5.76352 5.91640 5.93883 5.97934 6.02868 6.24414 6.33876 6.35087 6.59513 6.69991 6.71862 6.72982 6.81158 6.90928 6.97171 7.12936 7.43548 7.80868 8.21478 8.46075 8.84982 9.13910 9.63391 11.02203 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.010225 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.629650 B = 2737.831759 C = 3485.049041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.049 4.049 4 C -0.120 4.120 5 C -0.194 4.194 6 C 0.491 3.509 7 O -0.495 6.495 8 O -0.355 6.355 9 C 0.214 3.786 10 C -0.592 4.592 11 H 0.058 0.942 12 C 0.031 3.969 13 N -0.893 5.893 14 Si 1.064 2.936 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.286 1.286 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.110 4.110 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.279 0.721 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -2.816 -7.204 9.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.050 4.050 4 C -0.177 4.177 5 C -0.213 4.213 6 C 0.336 3.664 7 O -0.386 6.386 8 O -0.272 6.272 9 C 0.180 3.820 10 C -0.630 4.630 11 H 0.076 0.924 12 C -0.177 4.177 13 N -0.529 5.529 14 Si 0.892 3.108 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.181 4.181 19 C -0.187 4.187 20 C -0.147 4.147 21 H 0.092 0.908 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.472 -2.422 -7.143 8.769 hybrid contribution 1.510 -0.668 -0.029 1.651 sum 5.982 -3.090 -7.172 9.837 Atomic orbital electron populations 1.21584 0.94190 1.01554 1.01898 1.20930 0.97228 0.92458 1.02860 1.22518 0.92408 0.96048 0.94009 1.20927 1.01697 1.00617 0.94441 1.21997 1.06408 1.01894 0.91044 1.20905 0.76791 0.84108 0.84548 1.90685 1.41087 1.19912 1.86932 1.86482 1.76573 1.47391 1.16761 1.20796 0.93385 0.88456 0.79408 1.22018 0.89366 0.95320 1.56266 0.92414 1.25829 1.05963 0.93075 0.92817 1.70704 1.19338 1.19231 1.43589 0.83625 0.74794 0.75629 0.76757 1.20743 1.21324 1.21269 1.23333 0.98068 0.97636 0.99033 1.22994 0.97260 0.99105 0.99348 1.22940 0.95423 0.98330 0.98034 0.90774 0.94220 0.92980 0.92869 0.88025 0.90848 0.91144 0.91229 0.85641 0.90911 0.90103 0.92929 0.91321 0.92692 0.92378 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.33 37.16 0.35 -1.98 16 2 C -0.10 -1.58 5.35 -27.89 -0.15 -1.73 16 3 C -0.05 -0.77 5.37 -101.14 -0.54 -1.31 16 4 C -0.12 -1.37 10.01 36.01 0.36 -1.01 16 5 C -0.19 -3.60 9.75 -37.85 -0.37 -3.97 16 6 C 0.49 11.43 7.03 34.26 0.24 11.67 16 7 O -0.50 -12.09 9.35 -19.29 -0.18 -12.27 16 8 O -0.35 -9.03 9.38 -40.77 -0.38 -9.41 16 9 C 0.21 5.44 0.11 -90.96 -0.01 5.43 16 10 C -0.59 -16.82 7.39 -34.44 -0.25 -17.07 16 11 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 12 C 0.03 0.89 5.40 -17.82 -0.10 0.79 16 13 N -0.89 -26.66 13.50 55.43 0.75 -25.91 16 14 Si 1.06 25.61 29.90 -169.99 -5.08 20.53 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.14 -3.21 6.90 -25.82 -0.18 -3.39 16 19 C -0.15 -2.97 8.03 -25.83 -0.21 -3.18 16 20 C -0.11 -2.53 6.45 -25.92 -0.17 -2.69 16 21 H 0.07 1.58 6.34 -51.93 -0.33 1.25 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.10 1.89 5.87 -51.93 -0.30 1.59 16 26 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.28 8.32 5.67 -40.82 -0.23 8.09 16 31 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 32 H 0.05 1.18 7.30 -51.93 -0.38 0.80 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.35 7.64 -51.93 -0.40 0.95 16 36 H 0.09 2.03 8.09 -51.93 -0.42 1.61 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -31.16 294.43 -6.97 -38.13 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.48 Total: 2.92 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -1.03 Total: -18.43 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.75 Total: -25.91 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.56 Total: -21.68 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.16 -6.97 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.814 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds