Wall clock time and date at job start Sun Mar 29 2020 22:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 C 1.50704 * 119.99652 * 263.56120 * 3 2 1 5 5 C 1.33081 * 120.00532 * 83.56175 * 3 2 1 6 6 C 1.46953 * 119.99492 * 353.94852 * 5 3 2 7 7 O 1.21531 * 120.00240 * 1.92183 * 6 5 3 8 8 O 1.34800 * 119.99395 * 181.92583 * 6 5 3 9 9 C 1.45206 * 116.99808 * 182.65050 * 8 6 5 10 10 C 1.50692 * 112.85154 * 294.72834 * 9 8 6 11 11 H 1.08004 * 120.00077 * 114.68306 * 10 9 8 12 12 C 1.37879 * 120.00041 * 294.68113 * 10 9 8 13 13 N 1.31508 * 119.99940 * 0.20774 * 12 10 9 14 14 Si 1.86811 * 120.00000 * 180.20786 * 12 10 9 15 15 H 1.48499 * 109.46781 * 179.97438 * 14 12 10 16 16 H 1.48492 * 109.47076 * 300.00269 * 14 12 10 17 17 H 1.48506 * 109.46769 * 59.99979 * 14 12 10 18 18 C 1.53782 * 113.60866 * 65.92210 * 9 8 6 19 19 C 1.53959 * 87.02065 * 89.22827 * 18 9 8 20 20 C 1.53778 * 113.61302 * 163.52478 * 9 8 6 21 21 H 1.09003 * 109.46985 * 300.00056 * 1 2 3 22 22 H 1.08998 * 109.47223 * 60.00324 * 1 2 3 23 23 H 1.09005 * 109.47564 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47197 * 239.99866 * 2 1 3 25 25 H 1.09001 * 109.46744 * 119.99864 * 2 1 3 26 26 H 1.09009 * 109.47030 * 269.99896 * 4 3 2 27 27 H 1.09001 * 109.47219 * 30.00179 * 4 3 2 28 28 H 1.08999 * 109.47049 * 150.00058 * 4 3 2 29 29 H 1.07995 * 120.00418 * 173.94672 * 5 3 2 30 30 H 0.96998 * 120.00101 * 1.16905 * 13 12 10 31 31 H 1.09000 * 113.61131 * 203.74728 * 18 9 8 32 32 H 1.08998 * 113.61668 * 334.65569 * 18 9 8 33 33 H 1.08994 * 113.53629 * 270.81219 * 19 18 9 34 34 H 1.08999 * 113.74057 * 139.93800 * 19 18 9 35 35 H 1.08998 * 113.61555 * 25.36008 * 20 9 8 36 36 H 1.09004 * 113.61176 * 156.17131 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4214 2.0823 -1.2970 5 6 2.1323 2.0913 1.1452 6 6 1.6295 1.4962 2.3912 7 8 1.1543 0.3777 2.3820 8 8 1.6955 2.1911 3.5444 9 6 1.2349 1.5190 4.7463 10 6 -0.2411 1.2165 4.7185 11 1 -0.5822 0.1919 4.7030 12 6 -1.1562 2.2479 4.7129 13 7 -0.7408 3.4956 4.7277 14 14 -2.9860 1.8729 4.6843 15 1 -3.7520 3.1451 4.6832 16 1 -3.3131 1.0964 3.4616 17 1 -3.3474 1.0791 5.8862 18 6 2.1028 0.3154 5.1500 19 6 2.9530 1.3049 5.9675 20 6 1.7010 2.1944 6.0469 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.4781 1.9015 -1.4944 27 1 1.8240 1.6687 -2.1094 28 1 2.2437 3.1554 -1.2251 29 1 2.5829 3.0727 1.1588 30 1 0.2094 3.6904 4.7254 31 1 1.5762 -0.4170 5.7618 32 1 2.6389 -0.1360 4.3151 33 1 3.7695 1.7501 5.3992 34 1 3.2731 0.9145 6.9336 35 1 1.9129 3.2577 5.9350 36 1 1.0635 1.9778 6.9041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835400220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:10 Heat of formation + Delta-G solvation = -76.138479 kcal Electronic energy + Delta-G solvation = -17932.232262 eV Core-core repulsion = 15188.728119 eV Total energy + Delta-G solvation = -2743.504143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39296 -39.42082 -36.99898 -35.76901 -34.51328 -31.89440 -29.27517 -27.93260 -26.54415 -25.10305 -24.38980 -22.79275 -20.29367 -19.58085 -19.24046 -17.78534 -16.97273 -16.54822 -15.89081 -15.70878 -15.60246 -15.18701 -14.68047 -14.37268 -14.22055 -13.80093 -13.55345 -13.23827 -13.07913 -12.89134 -12.74179 -12.45233 -12.28282 -12.14447 -12.00522 -11.93267 -11.78174 -11.61070 -10.99265 -10.71378 -10.45204 -10.16148 -10.02430 -8.60757 -6.39140 0.33696 1.46133 1.52838 1.73503 2.18259 2.34465 2.51152 3.19931 3.75430 3.78604 3.80885 3.96997 4.10493 4.23519 4.41151 4.49142 4.53665 4.61902 4.65444 4.71394 4.82439 4.87637 4.92656 4.96542 5.04992 5.06771 5.24846 5.35594 5.35902 5.44249 5.50923 5.71374 5.86356 6.11560 6.33091 6.61168 7.29906 7.45507 8.76626 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.010225 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.629650 B = 2737.831759 C = 3485.049041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.014 4.014 4 C -0.119 4.119 5 C -0.235 4.235 6 C 0.475 3.525 7 O -0.519 6.519 8 O -0.370 6.370 9 C 0.190 3.810 10 C -0.604 4.604 11 H 0.036 0.964 12 C -0.013 4.013 13 N -0.915 5.915 14 Si 1.103 2.897 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.140 4.140 19 C -0.122 4.122 20 C -0.111 4.111 21 H 0.023 0.977 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.141 0.859 30 H 0.269 0.731 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -3.106 -8.929 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C -0.015 4.015 4 C -0.175 4.175 5 C -0.254 4.254 6 C 0.323 3.677 7 O -0.411 6.411 8 O -0.288 6.288 9 C 0.156 3.844 10 C -0.642 4.642 11 H 0.054 0.946 12 C -0.215 4.215 13 N -0.551 5.551 14 Si 0.926 3.074 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.178 4.178 19 C -0.159 4.159 20 C -0.148 4.148 21 H 0.043 0.957 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.338 -2.718 -8.865 10.698 hybrid contribution 1.269 -0.680 0.376 1.488 sum 6.606 -3.398 -8.489 11.281 Atomic orbital electron populations 1.21508 0.94968 1.01725 1.00597 1.20955 0.96457 0.93060 1.03428 1.23040 0.88129 0.95267 0.95036 1.21074 1.03680 1.00790 0.91919 1.21985 1.10148 1.03433 0.89802 1.21850 0.76514 0.84097 0.85245 1.90672 1.42378 1.20844 1.87207 1.86445 1.76852 1.47968 1.17545 1.20988 0.92507 0.90592 0.80334 1.22210 0.91632 0.94212 1.56098 0.94584 1.27039 1.09645 0.92714 0.92106 1.70804 1.18714 1.19834 1.45791 0.83122 0.70788 0.75904 0.77607 1.20260 1.21026 1.19111 1.23268 0.98105 0.97176 0.99269 1.22855 0.95842 0.96579 1.00599 1.22884 0.97089 0.98311 0.96554 0.95731 0.91624 0.92217 0.88741 0.90970 0.88012 0.88928 0.90368 0.84105 0.91997 0.90348 0.93457 0.90135 0.89249 0.93149 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.33 71.98 0.67 -3.71 16 2 C -0.10 -3.12 5.35 29.85 0.16 -2.96 16 3 C -0.01 -0.41 5.37 -17.60 -0.09 -0.50 16 4 C -0.12 -2.16 10.01 71.24 0.71 -1.45 16 5 C -0.23 -8.63 9.75 23.40 0.23 -8.40 16 6 C 0.48 22.81 7.03 70.11 0.49 23.31 16 7 O -0.52 -26.35 9.35 19.73 0.18 -26.16 16 8 O -0.37 -19.47 9.38 -57.12 -0.54 -20.01 16 9 C 0.19 9.97 0.11 -11.02 0.00 9.97 16 10 C -0.60 -35.51 7.39 25.60 0.19 -35.32 16 11 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 12 C -0.01 -0.75 5.40 84.66 0.46 -0.29 16 13 N -0.92 -56.04 13.50 21.45 0.29 -55.75 16 14 Si 1.10 52.50 29.90 68.60 2.05 54.55 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 C -0.14 -6.38 6.90 31.18 0.22 -6.16 16 19 C -0.12 -4.67 8.03 31.18 0.25 -4.42 16 20 C -0.11 -5.16 6.45 31.12 0.20 -4.96 16 21 H 0.02 1.05 6.34 -2.39 -0.02 1.03 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 25 H 0.07 2.69 5.87 -2.39 -0.01 2.68 16 26 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.09 1.36 8.12 -2.39 -0.02 1.34 16 28 H 0.08 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.27 16.62 5.67 -92.71 -0.53 16.09 16 31 H 0.08 3.52 8.09 -2.39 -0.02 3.50 16 32 H 0.05 2.15 7.30 -2.39 -0.02 2.14 16 33 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.05 2.38 7.64 -2.39 -0.02 2.36 16 36 H 0.08 3.77 8.09 -2.38 -0.02 3.76 16 Total: -1.00 -70.87 294.43 6.76 -64.11 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.29 Total: 18.16 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.48 Total: -34.89 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.29 Total: -55.75 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.35 Total: -46.17 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.05 Total: 54.55 kcal Total: -70.87 6.76 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.032 kcal (2) G-P(sol) polarization free energy of solvation -70.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds