Wall clock time and date at job start Sun Mar 29 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.46911 * 2 1 4 4 C 1.50698 * 120.00131 * 275.00530 * 3 2 1 5 5 C 1.33081 * 119.99687 * 95.00443 * 3 2 1 6 6 C 1.46950 * 119.99833 * 172.83429 * 5 3 2 7 7 O 1.21532 * 119.99885 * 354.65775 * 6 5 3 8 8 O 1.34804 * 119.99800 * 174.65425 * 6 5 3 9 9 C 1.45201 * 116.99936 * 182.77026 * 8 6 5 10 10 C 1.50697 * 112.84525 * 294.81427 * 9 8 6 11 11 H 1.08001 * 120.00022 * 118.09371 * 10 9 8 12 12 C 1.37883 * 120.00006 * 298.08646 * 10 9 8 13 13 N 1.31503 * 119.99968 * 1.43428 * 12 10 9 14 14 Si 1.86799 * 119.99871 * 181.43177 * 12 10 9 15 15 H 1.48504 * 109.47165 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47491 * 299.99982 * 14 12 10 17 17 H 1.48503 * 109.47276 * 60.00229 * 14 12 10 18 18 C 1.53784 * 113.61752 * 66.00702 * 9 8 6 19 19 C 1.53952 * 87.01680 * 89.22956 * 18 9 8 20 20 C 1.53778 * 113.61586 * 163.62019 * 9 8 6 21 21 H 1.09001 * 109.46789 * 299.99381 * 1 2 3 22 22 H 1.08997 * 109.47838 * 59.99831 * 1 2 3 23 23 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46789 * 240.00619 * 2 1 3 25 25 H 1.08992 * 109.47730 * 120.00620 * 2 1 3 26 26 H 1.08999 * 109.47181 * 263.75999 * 4 3 2 27 27 H 1.09001 * 109.47150 * 23.75899 * 4 3 2 28 28 H 1.08996 * 109.46852 * 143.76142 * 4 3 2 29 29 H 1.08001 * 119.99907 * 352.83569 * 5 3 2 30 30 H 0.96998 * 120.00197 * 355.07866 * 13 12 10 31 31 H 1.08997 * 113.61318 * 203.75312 * 18 9 8 32 32 H 1.09006 * 113.61321 * 334.65669 * 18 9 8 33 33 H 1.09001 * 113.54163 * 270.81078 * 19 18 9 34 34 H 1.08997 * 113.74333 * 139.94609 * 19 18 9 35 35 H 1.09002 * 113.61627 * 25.34090 * 20 9 8 36 36 H 1.09000 * 113.61426 * 156.16494 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1761 2.1693 -1.3001 5 6 2.3489 2.0147 1.1482 6 6 2.9853 3.3392 1.1393 7 8 3.3109 3.8498 0.0856 8 8 3.2078 3.9878 2.2999 9 6 3.7835 5.3179 2.2118 10 6 5.1822 5.3141 1.6511 11 1 5.3954 5.8327 0.7281 12 6 6.1899 4.6486 2.3166 13 7 5.9247 3.9937 3.4257 14 14 7.9319 4.6774 1.6427 15 1 8.8212 3.8919 2.5357 16 1 7.9463 4.0821 0.2823 17 1 8.4130 6.0807 1.5741 18 6 2.8557 6.3479 1.5460 19 6 2.2924 6.6290 2.9509 20 6 3.6403 6.1379 3.5048 21 1 -0.3633 0.5137 0.8901 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.2071 2.1001 -1.6470 27 1 1.5117 1.7329 -2.0459 28 1 1.9135 3.2161 -1.1476 29 1 2.1380 1.5231 2.0864 30 1 5.0370 4.0373 3.8142 31 1 3.3853 7.1951 1.1103 32 1 2.1297 5.9051 0.8641 33 1 1.4512 5.9895 3.2187 34 1 2.0996 7.6844 3.1434 35 1 3.5468 5.5259 4.4020 36 1 4.3857 6.9268 3.6063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835400221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:14 Heat of formation + Delta-G solvation = -63.418977 kcal Electronic energy + Delta-G solvation = -17646.642714 eV Core-core repulsion = 14903.690130 eV Total energy + Delta-G solvation = -2742.952584 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53802 -37.63149 -35.74796 -34.07144 -32.34632 -30.75509 -27.68450 -25.94478 -24.72472 -24.14930 -22.63661 -21.02849 -18.45658 -17.95992 -17.39083 -16.00090 -15.16767 -14.80630 -14.62290 -14.08191 -13.87332 -13.71279 -13.35217 -12.87099 -12.47874 -12.29677 -12.18691 -11.92673 -11.43846 -11.33208 -11.23415 -10.86627 -10.80493 -10.47096 -10.36508 -10.11381 -10.06252 -9.97401 -9.18543 -8.88163 -8.78141 -8.41523 -8.08460 -6.34305 -4.12118 1.76297 3.44027 3.47038 3.65473 3.90015 4.00424 4.53492 4.89351 5.00601 5.27432 5.33798 5.35129 5.55494 5.58718 5.64551 5.73431 5.79606 5.88687 5.93372 6.03542 6.08466 6.17992 6.29131 6.33118 6.47923 6.69228 6.71818 6.78613 6.83100 6.91397 7.11833 7.42476 7.79131 8.21135 8.45742 8.86056 9.13735 9.64423 11.03737 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.008440 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.795575 B = 3316.717150 C = 3966.580312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.050 4.050 4 C -0.120 4.120 5 C -0.191 4.191 6 C 0.492 3.508 7 O -0.500 6.500 8 O -0.353 6.353 9 C 0.214 3.786 10 C -0.593 4.593 11 H 0.057 0.943 12 C 0.031 3.969 13 N -0.894 5.894 14 Si 1.065 2.935 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.286 1.286 18 C -0.144 4.144 19 C -0.149 4.149 20 C -0.112 4.112 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.126 0.874 30 H 0.279 0.721 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.112 -4.442 -4.112 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.051 4.051 4 C -0.176 4.176 5 C -0.210 4.210 6 C 0.338 3.662 7 O -0.391 6.391 8 O -0.270 6.270 9 C 0.180 3.820 10 C -0.630 4.630 11 H 0.076 0.924 12 C -0.177 4.177 13 N -0.529 5.529 14 Si 0.893 3.107 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.212 1.212 18 C -0.182 4.182 19 C -0.186 4.186 20 C -0.149 4.149 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.144 0.856 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.482 -4.837 -4.132 9.821 hybrid contribution -1.461 0.583 -0.232 1.590 sum -8.943 -4.254 -4.364 10.822 Atomic orbital electron populations 1.21727 0.94579 1.01674 1.02389 1.20698 0.96347 0.92717 1.03181 1.22454 0.92539 0.94827 0.95290 1.21107 1.02237 1.01124 0.93142 1.22012 1.05062 0.95147 0.98804 1.20897 0.76938 0.85570 0.82836 1.90717 1.47603 1.68494 1.32260 1.86469 1.73851 1.32989 1.33687 1.20792 0.91854 0.76020 0.93367 1.22008 0.91647 1.38482 1.10891 0.92432 1.25834 1.04425 0.92284 0.95172 1.70681 1.26046 1.37076 1.19095 0.83622 0.75026 0.76425 0.75674 1.20734 1.21419 1.21230 1.23345 0.99021 1.00506 0.95281 1.22985 0.97759 0.99615 0.98270 1.22971 0.95530 0.98818 0.97629 0.92366 0.92472 0.92376 0.90523 0.90724 0.90337 0.93214 0.89398 0.85577 0.90906 0.90095 0.92939 0.91293 0.92664 0.92369 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.09 -1.08 6.08 -27.88 -0.17 -1.25 16 3 C -0.05 -0.79 5.36 -101.14 -0.54 -1.34 16 4 C -0.12 -1.91 8.47 36.00 0.30 -1.61 16 5 C -0.19 -3.60 9.73 -37.85 -0.37 -3.97 16 6 C 0.49 11.76 7.15 34.26 0.24 12.00 16 7 O -0.50 -12.71 11.41 -19.29 -0.22 -12.93 16 8 O -0.35 -9.11 9.16 -40.77 -0.37 -9.48 16 9 C 0.21 5.51 0.11 -90.96 -0.01 5.50 16 10 C -0.59 -17.04 7.37 -34.44 -0.25 -17.30 16 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.03 0.88 5.40 -17.82 -0.10 0.79 16 13 N -0.89 -26.91 13.51 55.43 0.75 -26.16 16 14 Si 1.06 25.81 29.90 -169.99 -5.08 20.72 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 C -0.14 -3.25 6.90 -25.83 -0.18 -3.43 16 19 C -0.15 -2.95 8.03 -25.83 -0.21 -3.16 16 20 C -0.11 -2.57 6.63 -25.92 -0.17 -2.75 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 26 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 27 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.09 1.61 6.17 -51.93 -0.32 1.28 16 29 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.28 8.38 5.74 -40.82 -0.23 8.15 16 31 H 0.08 1.80 8.09 -51.93 -0.42 1.38 16 32 H 0.05 1.18 7.31 -51.93 -0.38 0.80 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.34 7.74 -51.93 -0.40 0.94 16 36 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -31.97 298.44 -7.11 -39.07 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.60 Total: 1.89 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.08 Total: -17.61 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.75 Total: -26.16 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.59 Total: -22.41 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.97 -7.11 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.347 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds