Wall clock time and date at job start Sun Mar 29 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.46911 * 2 1 4 4 C 1.50698 * 120.00131 * 275.00530 * 3 2 1 5 5 C 1.33081 * 119.99687 * 95.00443 * 3 2 1 6 6 C 1.46950 * 119.99833 * 172.83429 * 5 3 2 7 7 O 1.21532 * 119.99885 * 354.65775 * 6 5 3 8 8 O 1.34804 * 119.99800 * 174.65425 * 6 5 3 9 9 C 1.45201 * 116.99936 * 182.77026 * 8 6 5 10 10 C 1.50697 * 112.84525 * 294.81427 * 9 8 6 11 11 H 1.08001 * 120.00022 * 118.09371 * 10 9 8 12 12 C 1.37883 * 120.00006 * 298.08646 * 10 9 8 13 13 N 1.31503 * 119.99968 * 1.43428 * 12 10 9 14 14 Si 1.86799 * 119.99871 * 181.43177 * 12 10 9 15 15 H 1.48504 * 109.47165 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47491 * 299.99982 * 14 12 10 17 17 H 1.48503 * 109.47276 * 60.00229 * 14 12 10 18 18 C 1.53784 * 113.61752 * 66.00702 * 9 8 6 19 19 C 1.53952 * 87.01680 * 89.22956 * 18 9 8 20 20 C 1.53778 * 113.61586 * 163.62019 * 9 8 6 21 21 H 1.09001 * 109.46789 * 299.99381 * 1 2 3 22 22 H 1.08997 * 109.47838 * 59.99831 * 1 2 3 23 23 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46789 * 240.00619 * 2 1 3 25 25 H 1.08992 * 109.47730 * 120.00620 * 2 1 3 26 26 H 1.08999 * 109.47181 * 263.75999 * 4 3 2 27 27 H 1.09001 * 109.47150 * 23.75899 * 4 3 2 28 28 H 1.08996 * 109.46852 * 143.76142 * 4 3 2 29 29 H 1.08001 * 119.99907 * 352.83569 * 5 3 2 30 30 H 0.96998 * 120.00197 * 355.07866 * 13 12 10 31 31 H 1.08997 * 113.61318 * 203.75312 * 18 9 8 32 32 H 1.09006 * 113.61321 * 334.65669 * 18 9 8 33 33 H 1.09001 * 113.54163 * 270.81078 * 19 18 9 34 34 H 1.08997 * 113.74333 * 139.94609 * 19 18 9 35 35 H 1.09002 * 113.61627 * 25.34090 * 20 9 8 36 36 H 1.09000 * 113.61426 * 156.16494 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1761 2.1693 -1.3001 5 6 2.3489 2.0147 1.1482 6 6 2.9853 3.3392 1.1393 7 8 3.3109 3.8498 0.0856 8 8 3.2078 3.9878 2.2999 9 6 3.7835 5.3179 2.2118 10 6 5.1822 5.3141 1.6511 11 1 5.3954 5.8327 0.7281 12 6 6.1899 4.6486 2.3166 13 7 5.9247 3.9937 3.4257 14 14 7.9319 4.6774 1.6427 15 1 8.8212 3.8919 2.5357 16 1 7.9463 4.0821 0.2823 17 1 8.4130 6.0807 1.5741 18 6 2.8557 6.3479 1.5460 19 6 2.2924 6.6290 2.9509 20 6 3.6403 6.1379 3.5048 21 1 -0.3633 0.5137 0.8901 22 1 -0.3635 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.2071 2.1001 -1.6470 27 1 1.5117 1.7329 -2.0459 28 1 1.9135 3.2161 -1.1476 29 1 2.1380 1.5231 2.0864 30 1 5.0370 4.0373 3.8142 31 1 3.3853 7.1951 1.1103 32 1 2.1297 5.9051 0.8641 33 1 1.4512 5.9895 3.2187 34 1 2.0996 7.6844 3.1434 35 1 3.5468 5.5259 4.4020 36 1 4.3857 6.9268 3.6063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835400221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:14 Heat of formation + Delta-G solvation = -81.054556 kcal Electronic energy + Delta-G solvation = -17647.407450 eV Core-core repulsion = 14903.690130 eV Total energy + Delta-G solvation = -2743.717320 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38550 -39.33984 -37.15173 -35.92963 -34.51719 -31.86137 -29.13228 -27.97000 -26.55857 -25.42827 -24.39734 -22.61039 -20.30751 -19.54837 -19.28730 -17.74699 -16.91176 -16.67968 -15.96921 -15.71624 -15.43215 -15.35830 -14.87273 -14.47822 -14.18891 -13.84907 -13.55640 -13.23753 -13.08336 -12.75493 -12.72994 -12.33439 -12.30358 -12.23313 -12.00070 -11.93073 -11.82113 -11.75908 -11.04581 -10.78520 -10.52666 -10.20953 -10.06399 -8.60951 -6.39276 0.29666 1.46778 1.53408 1.74322 2.16512 2.27702 2.51967 3.17735 3.68799 3.80261 3.81032 3.93489 4.08176 4.22579 4.28172 4.39869 4.52256 4.60444 4.70555 4.73126 4.79739 4.86852 4.95722 4.95919 5.05464 5.06575 5.11699 5.34303 5.35118 5.43331 5.49137 5.65425 5.81542 6.10022 6.28320 6.60447 7.24797 7.44754 8.76676 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.008440 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.795575 B = 3316.717150 C = 3966.580312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.013 4.013 4 C -0.123 4.123 5 C -0.231 4.231 6 C 0.478 3.522 7 O -0.530 6.530 8 O -0.367 6.367 9 C 0.188 3.812 10 C -0.606 4.606 11 H 0.037 0.963 12 C -0.014 4.014 13 N -0.915 5.915 14 Si 1.105 2.895 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.264 1.264 18 C -0.142 4.142 19 C -0.121 4.121 20 C -0.112 4.112 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.140 0.860 30 H 0.269 0.731 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -5.437 -4.773 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.014 4.014 4 C -0.179 4.179 5 C -0.250 4.250 6 C 0.326 3.674 7 O -0.422 6.422 8 O -0.284 6.284 9 C 0.153 3.847 10 C -0.644 4.644 11 H 0.055 0.945 12 C -0.216 4.216 13 N -0.552 5.552 14 Si 0.927 3.073 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.179 4.179 19 C -0.158 4.158 20 C -0.150 4.150 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.158 0.842 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.632 -5.825 -4.787 11.461 hybrid contribution -1.180 0.836 -0.161 1.455 sum -9.812 -4.989 -4.948 12.069 Atomic orbital electron populations 1.21722 0.92679 1.03338 1.02324 1.20854 0.97753 0.89495 1.04734 1.22982 0.88142 0.96315 0.93920 1.21109 1.02294 1.00081 0.94396 1.21971 1.08668 0.93572 1.00827 1.21845 0.76633 0.86914 0.81989 1.90691 1.49249 1.69547 1.32734 1.86440 1.74025 1.33082 1.34871 1.21034 0.91310 0.76841 0.95470 1.22221 0.93833 1.38260 1.10054 0.94495 1.27081 1.07915 0.91690 0.94950 1.70783 1.25577 1.38665 1.20145 0.83104 0.71364 0.77708 0.75081 1.20238 1.21225 1.18896 1.23287 0.98427 0.99457 0.96770 1.22847 0.96132 1.01907 0.94896 1.22925 0.97563 0.98252 0.96276 0.93070 0.92004 0.89885 0.88256 0.89949 0.91629 0.89117 0.92040 0.84183 0.91975 0.90235 0.93558 0.90161 0.89110 0.93035 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 71.98 0.71 -1.61 16 2 C -0.09 -1.83 6.08 29.85 0.18 -1.65 16 3 C -0.01 -0.39 5.36 -17.60 -0.09 -0.48 16 4 C -0.12 -3.78 8.47 71.24 0.60 -3.17 16 5 C -0.23 -8.73 9.73 23.40 0.23 -8.50 16 6 C 0.48 23.49 7.15 70.10 0.50 24.00 16 7 O -0.53 -27.88 11.41 19.73 0.23 -27.66 16 8 O -0.37 -19.48 9.16 -57.15 -0.52 -20.01 16 9 C 0.19 9.90 0.11 -11.01 0.00 9.90 16 10 C -0.61 -35.84 7.37 25.60 0.19 -35.65 16 11 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 12 C -0.01 -0.84 5.40 84.66 0.46 -0.38 16 13 N -0.92 -56.29 13.51 21.45 0.29 -56.00 16 14 Si 1.11 52.56 29.90 68.60 2.05 54.61 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 C -0.14 -6.45 6.90 31.18 0.22 -6.23 16 19 C -0.12 -4.61 8.03 31.18 0.25 -4.36 16 20 C -0.11 -5.20 6.63 31.12 0.21 -5.00 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 26 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 27 H 0.09 2.02 8.09 -2.39 -0.02 2.01 16 28 H 0.06 2.26 6.17 -2.39 -0.01 2.25 16 29 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.27 16.67 5.74 -92.71 -0.53 16.14 16 31 H 0.08 3.57 8.09 -2.39 -0.02 3.55 16 32 H 0.05 2.12 7.31 -2.38 -0.02 2.10 16 33 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.05 2.41 7.74 -2.39 -0.02 2.39 16 36 H 0.08 3.84 8.09 -2.39 -0.02 3.82 16 Total: -1.00 -71.49 298.44 6.77 -64.72 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.28 Total: 17.47 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 3.45 Total: -33.15 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.29 Total: -56.00 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.30 Total: -47.66 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 2.05 Total: 54.61 kcal Total: -71.49 6.77 -64.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835400221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.332 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds