Wall clock time and date at job start Sun Mar 29 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99587 * 2 1 4 4 H 1.48496 * 109.47373 * 269.99729 * 3 2 1 5 5 H 1.48499 * 109.47243 * 30.00267 * 3 2 1 6 6 H 1.48508 * 109.47006 * 149.99871 * 3 2 1 7 7 C 1.37877 * 120.00654 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99317 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47335 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46987 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00309 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99810 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99972 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.29445 * 117.95895 * 359.73337 * 15 14 13 17 17 C 1.50074 * 124.07477 * 180.75080 * 16 15 14 18 18 C 1.53016 * 110.14671 * 342.87319 * 17 16 15 19 19 C 1.53391 * 108.44058 * 49.43435 * 18 17 16 20 20 C 1.50066 * 117.96583 * 180.02562 * 15 14 13 21 21 H 0.96993 * 120.00148 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47306 * 59.99746 * 9 7 2 23 23 H 1.09004 * 109.47409 * 300.00351 * 9 7 2 24 24 H 1.08996 * 109.47155 * 60.00181 * 10 9 7 25 25 H 1.09004 * 109.46719 * 299.99489 * 10 9 7 26 26 H 1.08999 * 109.46790 * 60.00634 * 14 13 11 27 27 H 1.09001 * 109.47034 * 300.00001 * 14 13 11 28 28 H 1.07999 * 117.96176 * 0.73020 * 16 15 14 29 29 H 1.09002 * 109.35609 * 222.66402 * 17 16 15 30 30 H 1.09003 * 109.35439 * 103.08085 * 17 16 15 31 31 H 1.09003 * 109.64533 * 289.75036 * 18 17 16 32 32 H 1.09000 * 109.64519 * 169.11862 * 18 17 16 33 33 H 1.09001 * 109.64689 * 172.88318 * 19 18 17 34 34 H 1.09003 * 109.64136 * 52.25083 * 19 18 17 35 35 H 1.09003 * 109.35468 * 282.79297 * 20 15 14 36 36 H 1.08998 * 109.35916 * 42.51411 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5287 -2.6362 -0.0014 12 8 6.1328 -1.5899 -0.0009 13 8 6.2000 -3.7987 -0.0020 14 6 7.6499 -3.7226 -0.0026 15 6 8.2261 -5.1151 -0.0039 16 6 7.4016 -6.1131 0.0010 17 6 7.8243 -7.5529 0.0168 18 6 9.2922 -7.6758 -0.3973 19 6 10.1135 -6.6739 0.4241 20 6 9.7198 -5.2587 -0.0041 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6806 0.8905 23 1 3.8753 -0.6794 -0.8894 24 1 3.6588 -3.1492 -0.8920 25 1 3.6581 -3.1512 0.8880 26 1 7.9862 -3.1908 0.8874 27 1 7.9855 -3.1902 -0.8926 28 1 6.3437 -5.8959 -0.0063 29 1 7.2042 -8.1191 -0.6782 30 1 7.6974 -7.9557 1.0217 31 1 9.3938 -7.4497 -1.4587 32 1 9.6452 -8.6880 -0.1997 33 1 11.1760 -6.8309 0.2376 34 1 9.9008 -6.8080 1.4847 35 1 10.1012 -5.0657 -1.0068 36 1 10.1520 -4.5394 0.6915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835816778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:38 Heat of formation + Delta-G solvation = -101.511570 kcal Electronic energy + Delta-G solvation = -16378.407126 eV Core-core repulsion = 13633.802723 eV Total energy + Delta-G solvation = -2744.604403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19771 -38.69066 -36.23258 -33.62566 -32.28717 -31.35403 -30.96531 -27.13164 -25.66740 -23.50093 -22.15382 -21.38406 -19.77534 -17.76539 -17.44277 -16.61915 -16.36577 -16.27353 -15.02362 -14.64156 -14.13353 -14.12048 -13.83796 -13.47751 -12.89836 -12.79658 -12.67139 -12.36230 -12.23577 -11.99625 -11.44264 -11.07727 -11.02781 -10.66786 -10.60616 -10.42533 -10.30428 -10.16220 -9.93291 -9.70025 -9.26267 -8.87361 -8.56011 -6.07565 -4.07481 2.10317 2.69557 2.98621 3.34168 3.41084 3.50333 4.42056 4.46024 4.54931 4.65463 4.98440 5.06153 5.19594 5.23540 5.27169 5.29472 5.37416 5.42528 5.48327 5.61168 5.66511 5.74224 5.79401 5.98125 5.99270 6.01805 6.06523 6.47161 6.55917 6.76683 6.95128 7.23537 7.30738 7.70524 8.21178 8.46706 8.94739 9.54228 11.05030 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058623 B = 0.004044 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.514678 B = 6922.804163 C = 7336.903280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.512 6.512 13 O -0.362 6.362 14 C 0.099 3.901 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.091 4.091 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.078 4.078 21 H 0.264 0.736 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.192 -14.278 0.061 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.399 6.399 13 O -0.280 6.280 14 C 0.025 3.975 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.128 4.128 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.115 4.115 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.243 -13.841 0.065 23.703 hybrid contribution 0.419 1.086 -0.034 1.165 sum 19.662 -12.754 0.032 23.437 Atomic orbital electron populations 1.69902 1.06272 1.27084 1.50638 1.24956 0.94727 0.99207 0.94222 0.86801 0.80576 0.83409 0.78791 1.20157 1.21300 1.18607 1.21031 0.88840 0.94805 1.51817 0.90645 1.19481 0.96909 0.89657 0.97921 1.21542 0.83402 1.03520 1.04829 1.24739 0.92727 0.80918 0.71414 1.90615 1.70725 1.33137 1.45425 1.86500 1.20790 1.35973 1.84713 1.21710 0.77702 0.95636 1.02444 1.20671 0.95237 0.93506 1.04672 1.22083 1.00714 0.93739 0.98818 1.20480 0.96129 0.94358 1.01854 1.21629 0.95156 0.99023 1.00159 1.21577 0.99445 0.94271 1.00235 1.20273 0.91594 0.97665 1.02003 0.92589 0.95606 0.96061 0.88339 0.88306 0.90700 0.90740 0.85994 0.90883 0.90776 0.91725 0.91771 0.91581 0.91629 0.90798 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 -0.05 3.33 -27.89 -0.09 -0.15 16 10 C -0.10 -1.88 5.75 -27.88 -0.16 -2.04 16 11 C 0.46 8.68 7.96 36.01 0.29 8.97 16 12 O -0.51 -11.11 15.73 -18.74 -0.29 -11.41 16 13 O -0.36 -5.83 8.32 -39.27 -0.33 -6.16 16 14 C 0.10 1.35 5.78 36.01 0.21 1.55 16 15 C -0.14 -1.60 5.84 -100.94 -0.59 -2.19 16 16 C -0.14 -1.53 9.22 -35.90 -0.33 -1.86 16 17 C -0.09 -0.80 6.11 -28.18 -0.17 -0.97 16 18 C -0.12 -0.93 6.01 -26.52 -0.16 -1.09 16 19 C -0.12 -0.89 6.01 -26.52 -0.16 -1.05 16 20 C -0.08 -0.69 5.81 -28.19 -0.16 -0.85 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.03 0.66 7.16 -51.93 -0.37 0.28 16 23 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 24 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 25 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 26 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 27 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.12 1.55 6.41 -52.49 -0.34 1.21 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 8.12 -51.93 -0.42 0.08 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 298.23 15.07 4.49 4.49 Total: -1.00 -31.80 298.23 -7.54 -39.34 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.76 Total: -3.97 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.76 Total: -12.98 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.62 Total: -17.56 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.80 -7.54 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835816778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.171 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds