Wall clock time and date at job start Sun Mar 29 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99587 * 2 1 4 4 H 1.48496 * 109.47373 * 269.99729 * 3 2 1 5 5 H 1.48499 * 109.47243 * 30.00267 * 3 2 1 6 6 H 1.48508 * 109.47006 * 149.99871 * 3 2 1 7 7 C 1.37877 * 120.00654 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99317 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47335 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46987 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00309 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99810 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99972 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.29445 * 117.95895 * 359.73337 * 15 14 13 17 17 C 1.50074 * 124.07477 * 180.75080 * 16 15 14 18 18 C 1.53016 * 110.14671 * 342.87319 * 17 16 15 19 19 C 1.53391 * 108.44058 * 49.43435 * 18 17 16 20 20 C 1.50066 * 117.96583 * 180.02562 * 15 14 13 21 21 H 0.96993 * 120.00148 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47306 * 59.99746 * 9 7 2 23 23 H 1.09004 * 109.47409 * 300.00351 * 9 7 2 24 24 H 1.08996 * 109.47155 * 60.00181 * 10 9 7 25 25 H 1.09004 * 109.46719 * 299.99489 * 10 9 7 26 26 H 1.08999 * 109.46790 * 60.00634 * 14 13 11 27 27 H 1.09001 * 109.47034 * 300.00001 * 14 13 11 28 28 H 1.07999 * 117.96176 * 0.73020 * 16 15 14 29 29 H 1.09002 * 109.35609 * 222.66402 * 17 16 15 30 30 H 1.09003 * 109.35439 * 103.08085 * 17 16 15 31 31 H 1.09003 * 109.64533 * 289.75036 * 18 17 16 32 32 H 1.09000 * 109.64519 * 169.11862 * 18 17 16 33 33 H 1.09001 * 109.64689 * 172.88318 * 19 18 17 34 34 H 1.09003 * 109.64136 * 52.25083 * 19 18 17 35 35 H 1.09003 * 109.35468 * 282.79297 * 20 15 14 36 36 H 1.08998 * 109.35916 * 42.51411 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5287 -2.6362 -0.0014 12 8 6.1328 -1.5899 -0.0009 13 8 6.2000 -3.7987 -0.0020 14 6 7.6499 -3.7226 -0.0026 15 6 8.2261 -5.1151 -0.0039 16 6 7.4016 -6.1131 0.0010 17 6 7.8243 -7.5529 0.0168 18 6 9.2922 -7.6758 -0.3973 19 6 10.1135 -6.6739 0.4241 20 6 9.7198 -5.2587 -0.0041 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6806 0.8905 23 1 3.8753 -0.6794 -0.8894 24 1 3.6588 -3.1492 -0.8920 25 1 3.6581 -3.1512 0.8880 26 1 7.9862 -3.1908 0.8874 27 1 7.9855 -3.1902 -0.8926 28 1 6.3437 -5.8959 -0.0063 29 1 7.2042 -8.1191 -0.6782 30 1 7.6974 -7.9557 1.0217 31 1 9.3938 -7.4497 -1.4587 32 1 9.6452 -8.6880 -0.1997 33 1 11.1760 -6.8309 0.2376 34 1 9.9008 -6.8080 1.4847 35 1 10.1012 -5.0657 -1.0068 36 1 10.1520 -4.5394 0.6915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835816778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:38 Heat of formation + Delta-G solvation = -118.623448 kcal Electronic energy + Delta-G solvation = -16379.149152 eV Core-core repulsion = 13633.802723 eV Total energy + Delta-G solvation = -2745.346429 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61417 -39.55835 -37.59110 -35.65250 -33.57079 -32.97563 -31.65474 -28.75913 -26.99901 -24.28026 -23.70495 -22.34517 -21.39136 -19.37689 -18.66295 -18.09566 -17.74568 -17.49271 -16.34747 -16.05729 -15.71476 -15.15118 -14.86347 -14.65481 -14.47579 -14.18019 -13.71872 -13.55607 -13.15914 -13.09996 -12.93809 -12.89726 -12.26407 -12.04922 -11.93525 -11.81043 -11.61830 -11.49468 -11.41720 -11.31462 -11.10690 -10.80104 -9.73012 -8.33074 -6.37520 1.17063 1.23045 1.33680 1.35699 1.49416 1.63784 2.33590 3.02219 3.56221 3.77262 3.94751 4.07056 4.21459 4.22472 4.27515 4.31304 4.37044 4.46897 4.54795 4.71096 4.73405 4.81943 4.99035 5.03051 5.08223 5.19351 5.22406 5.28003 5.34097 5.40518 5.48090 5.57463 5.70771 6.05028 6.19954 6.67126 6.77197 7.27742 8.82515 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058623 B = 0.004044 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.514678 B = 6922.804163 C = 7336.903280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.002 3.998 10 C -0.091 4.091 11 C 0.469 3.531 12 O -0.541 6.541 13 O -0.355 6.355 14 C 0.092 3.908 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.078 4.078 21 H 0.269 0.731 22 H 0.017 0.983 23 H 0.016 0.984 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.273 -14.975 0.034 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.128 4.128 11 C 0.314 3.686 12 O -0.431 6.431 13 O -0.272 6.272 14 C 0.019 3.981 15 C -0.145 4.145 16 C -0.161 4.161 17 C -0.128 4.128 18 C -0.158 4.158 19 C -0.153 4.153 20 C -0.115 4.115 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.336 -14.569 0.037 25.835 hybrid contribution -0.249 1.201 -0.024 1.227 sum 21.087 -13.368 0.013 24.967 Atomic orbital electron populations 1.70017 1.07860 1.28253 1.52100 1.25809 0.95518 1.02939 0.94083 0.85811 0.79291 0.79275 0.79250 1.19224 1.20348 1.18270 1.21333 0.90869 0.93938 1.50904 0.93046 1.19324 0.94408 0.92731 0.97112 1.21342 0.84392 1.00711 1.06401 1.24362 0.92386 0.81098 0.70732 1.90606 1.71238 1.34263 1.47022 1.86483 1.22496 1.34228 1.83963 1.21997 0.75884 0.97572 1.02648 1.20801 0.96726 0.91958 1.05018 1.22205 0.99815 0.95390 0.98675 1.20522 0.97250 0.92515 1.02509 1.21641 0.94146 1.00029 1.00008 1.21594 1.00481 0.93192 1.00069 1.20347 0.89543 0.98915 1.02734 0.92247 0.96442 0.96566 0.86821 0.86834 0.90583 0.90612 0.87874 0.90310 0.90070 0.91909 0.90106 0.89809 0.91781 0.90032 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 2 C 0.01 0.85 5.47 84.65 0.46 1.32 16 3 Si 0.94 45.80 27.47 68.60 1.88 47.69 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 7 C -0.53 -30.42 9.66 25.60 0.25 -30.17 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 9 C 0.00 0.09 3.33 29.85 0.10 0.19 16 10 C -0.09 -3.51 5.75 29.85 0.17 -3.34 16 11 C 0.47 17.34 7.96 71.24 0.57 17.91 16 12 O -0.54 -23.08 15.73 21.99 0.35 -22.73 16 13 O -0.35 -11.09 8.32 -51.46 -0.43 -11.52 16 14 C 0.09 2.42 5.78 71.24 0.41 2.83 16 15 C -0.14 -3.09 5.84 -15.10 -0.09 -3.17 16 16 C -0.14 -3.05 9.22 27.04 0.25 -2.80 16 17 C -0.09 -1.42 6.11 29.66 0.18 -1.24 16 18 C -0.12 -1.51 6.01 30.73 0.18 -1.33 16 19 C -0.12 -1.43 6.01 30.73 0.18 -1.25 16 20 C -0.08 -1.21 5.81 29.65 0.17 -1.04 16 21 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 22 H 0.02 0.87 7.16 -2.38 -0.02 0.85 16 23 H 0.02 0.80 7.52 -2.39 -0.02 0.78 16 24 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 25 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 26 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 27 H 0.08 1.97 8.13 -2.39 -0.02 1.95 16 28 H 0.10 2.56 6.41 -2.91 -0.02 2.54 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.82 8.12 -2.39 -0.02 0.81 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -67.28 298.23 5.93 -61.35 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.98 Total: 5.61 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 2.84 Total: -22.10 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.30 Total: -58.29 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.08 Total: -34.25 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.69 kcal Total: -67.28 5.93 -61.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835816778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.275 kcal (2) G-P(sol) polarization free energy of solvation -67.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds