Wall clock time and date at job start Sun Mar 29 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 13 13 C 1.34796 * 117.00441 * 270.00158 * 12 2 1 14 14 O 1.21536 * 119.99946 * 359.97438 * 13 12 2 15 15 C 1.46952 * 120.00241 * 180.02562 * 13 12 2 16 16 C 1.33087 * 119.99724 * 180.02562 * 15 13 12 17 17 C 1.50698 * 119.99662 * 179.97438 * 16 15 13 18 18 C 1.54268 * 110.03301 * 237.90672 * 17 16 15 19 19 C 1.54958 * 104.16251 * 217.13742 * 18 17 16 20 20 C 1.54897 * 102.77761 * 37.88619 * 19 18 17 21 21 C 1.53877 * 110.03200 * 120.68736 * 17 16 15 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.07993 * 119.99992 * 359.97438 * 15 13 12 27 27 H 1.07993 * 120.00285 * 359.97438 * 16 15 13 28 28 H 1.09002 * 110.02117 * 359.29646 * 17 16 15 29 29 H 1.09002 * 110.48465 * 335.78139 * 18 17 16 30 30 H 1.08999 * 110.48835 * 98.42383 * 18 17 16 31 31 H 1.09003 * 110.71780 * 279.57449 * 19 18 17 32 32 H 1.08996 * 110.76610 * 156.22011 * 19 18 17 33 33 H 1.09005 * 110.48762 * 203.40816 * 20 19 18 34 34 H 1.08995 * 110.59894 * 80.81562 * 20 19 18 35 35 H 1.08992 * 110.03258 * 238.56485 * 21 17 16 36 36 H 1.08998 * 110.03307 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0671 2.2857 14 8 1.9978 1.2619 2.2549 15 6 2.7078 -0.5580 3.5222 16 6 2.9087 0.1840 4.6086 17 6 3.4104 -0.4572 5.8767 18 6 2.4149 -0.2024 7.0274 19 6 3.3171 0.0097 8.2692 20 6 4.5142 0.8049 7.6913 21 6 4.7448 0.1825 6.2986 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.9039 -1.6197 3.5495 27 1 2.7122 1.2455 4.5814 28 1 3.5411 -1.5289 5.7266 29 1 1.8232 0.6913 6.8289 30 1 1.7663 -1.0668 7.1692 31 1 3.6480 -0.9470 8.6734 32 1 2.7973 0.5925 9.0296 33 1 5.3966 0.6752 8.3179 34 1 4.2642 1.8619 7.6000 35 1 5.5227 -0.5788 6.3541 36 1 5.0292 0.9570 5.5864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842716516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:21 Heat of formation + Delta-G solvation = -99.458342 kcal Electronic energy + Delta-G solvation = -16421.578789 eV Core-core repulsion = 13677.063421 eV Total energy + Delta-G solvation = -2744.515368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.40974 -38.45822 -35.73061 -33.28287 -33.13689 -29.65439 -28.86949 -28.26015 -25.29599 -23.54115 -20.93549 -20.86625 -19.70054 -19.09653 -17.05725 -16.59526 -15.91026 -15.47000 -14.97127 -14.81795 -14.45214 -13.67580 -13.53970 -13.02526 -12.29620 -12.03519 -11.91895 -11.66053 -11.37776 -11.29580 -11.26243 -11.17654 -11.01004 -10.86292 -10.81602 -10.66089 -10.35941 -10.25675 -9.63663 -9.49374 -9.23504 -8.87667 -8.46140 -6.15652 -4.22567 1.53416 3.28271 3.31302 3.34043 3.66251 3.75756 4.34736 4.40377 4.47883 4.60903 5.11275 5.16960 5.20097 5.25086 5.34731 5.43329 5.47356 5.50225 5.69679 5.71421 5.79465 5.87015 6.01923 6.11526 6.15363 6.51751 6.56609 6.69774 6.92925 6.95674 7.21085 7.62571 7.76129 7.97011 8.17567 8.68070 8.92465 9.42720 10.91884 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.004048 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.217468 B = 6914.847675 C = 7096.906118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.527 6.527 15 C -0.178 4.178 16 C -0.070 4.070 17 C -0.069 4.069 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.118 4.118 22 H 0.016 0.984 23 H 0.037 0.963 24 H 0.099 0.901 25 H 0.266 0.734 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -2.548 18.198 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.269 6.269 13 C 0.327 3.673 14 O -0.419 6.419 15 C -0.197 4.197 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.163 4.163 21 C -0.156 4.156 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.597 -2.093 17.965 18.662 hybrid contribution 0.175 -0.311 -0.999 1.060 sum 4.772 -2.404 16.966 17.788 Atomic orbital electron populations 1.22158 0.97582 1.00100 1.01373 1.20623 0.91399 0.93941 0.77861 0.93578 1.21006 1.32498 1.13486 0.88951 0.91353 1.24891 0.94940 0.95110 0.99061 1.69891 1.36090 1.22558 1.24249 0.86320 0.79211 0.79531 0.80979 1.19927 1.21035 1.19983 1.86581 1.75773 1.43245 1.21299 1.21405 0.75093 0.85420 0.85386 1.90769 1.49474 1.16579 1.85123 1.22176 1.04988 1.01080 0.91500 1.23767 0.91972 1.00365 0.92751 1.21035 0.95219 1.00039 0.92500 1.22438 0.97339 1.02244 0.93492 1.22521 0.96334 1.00153 0.97249 1.22387 0.98203 0.99751 0.95978 1.22193 0.96240 1.00310 0.96840 0.96535 0.94432 0.88253 0.92361 0.84988 0.85550 0.89949 0.91013 0.91259 0.91478 0.91541 0.91717 0.91500 0.91363 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 2 C 0.21 5.99 2.56 -27.88 -0.07 5.92 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -15.07 8.90 -34.44 -0.31 -15.37 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.16 16 8 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 O -0.35 -8.87 9.87 -40.75 -0.40 -9.27 16 13 C 0.48 10.68 7.88 34.26 0.27 10.95 16 14 O -0.53 -13.03 15.48 -19.29 -0.30 -13.32 16 15 C -0.18 -2.89 9.77 -37.85 -0.37 -3.26 16 16 C -0.07 -0.95 7.98 -36.10 -0.29 -1.24 16 17 C -0.07 -0.70 3.24 -90.65 -0.29 -1.00 16 18 C -0.12 -1.05 6.36 -25.03 -0.16 -1.21 16 19 C -0.13 -0.94 6.91 -24.70 -0.17 -1.11 16 20 C -0.13 -0.98 6.83 -25.06 -0.17 -1.16 16 21 C -0.12 -1.08 6.45 -25.61 -0.17 -1.24 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.13 1.84 7.88 -52.49 -0.41 1.42 16 27 H 0.13 1.84 7.49 -52.49 -0.39 1.44 16 28 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 29 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 302.26 15.07 4.56 4.56 Total: -1.00 -31.23 302.26 -7.65 -38.87 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.63 Total: -1.29 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.47 Total: -10.78 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.63 Total: -25.16 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.70 Total: -22.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.23 -7.65 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.584 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds