Wall clock time and date at job start Sun Mar 29 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 O 1.45194 * 109.47339 * 120.00075 * 2 1 3 13 13 C 1.34796 * 117.00441 * 270.00158 * 12 2 1 14 14 O 1.21536 * 119.99946 * 359.97438 * 13 12 2 15 15 C 1.46952 * 120.00241 * 180.02562 * 13 12 2 16 16 C 1.33087 * 119.99724 * 180.02562 * 15 13 12 17 17 C 1.50698 * 119.99662 * 179.97438 * 16 15 13 18 18 C 1.54268 * 110.03301 * 237.90672 * 17 16 15 19 19 C 1.54958 * 104.16251 * 217.13742 * 18 17 16 20 20 C 1.54897 * 102.77761 * 37.88619 * 19 18 17 21 21 C 1.53877 * 110.03200 * 120.68736 * 17 16 15 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.07993 * 119.99992 * 359.97438 * 15 13 12 27 27 H 1.07993 * 120.00285 * 359.97438 * 16 15 13 28 28 H 1.09002 * 110.02117 * 359.29646 * 17 16 15 29 29 H 1.09002 * 110.48465 * 335.78139 * 18 17 16 30 30 H 1.08999 * 110.48835 * 98.42383 * 18 17 16 31 31 H 1.09003 * 110.71780 * 279.57449 * 19 18 17 32 32 H 1.08996 * 110.76610 * 156.22011 * 19 18 17 33 33 H 1.09005 * 110.48762 * 203.40816 * 20 19 18 34 34 H 1.08995 * 110.59894 * 80.81562 * 20 19 18 35 35 H 1.08992 * 110.03258 * 238.56485 * 21 17 16 36 36 H 1.08998 * 110.03307 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 8 2.0140 -0.6845 1.1855 13 6 2.2180 0.0671 2.2857 14 8 1.9978 1.2619 2.2549 15 6 2.7078 -0.5580 3.5222 16 6 2.9087 0.1840 4.6086 17 6 3.4104 -0.4572 5.8767 18 6 2.4149 -0.2024 7.0274 19 6 3.3171 0.0097 8.2692 20 6 4.5142 0.8049 7.6913 21 6 4.7448 0.1825 6.2986 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.9039 -1.6197 3.5495 27 1 2.7122 1.2455 4.5814 28 1 3.5411 -1.5289 5.7266 29 1 1.8232 0.6913 6.8289 30 1 1.7663 -1.0668 7.1692 31 1 3.6480 -0.9470 8.6734 32 1 2.7973 0.5925 9.0296 33 1 5.3966 0.6752 8.3179 34 1 4.2642 1.8619 7.6000 35 1 5.5227 -0.5788 6.3541 36 1 5.0292 0.9570 5.5864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:20 Heat of formation + Delta-G solvation = -116.151865 kcal Electronic energy + Delta-G solvation = -16422.302674 eV Core-core repulsion = 13677.063421 eV Total energy + Delta-G solvation = -2745.239254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20817 -39.32515 -37.63904 -35.33754 -34.40165 -31.73432 -29.54647 -29.28821 -27.48772 -25.07708 -22.70309 -21.50140 -20.98988 -20.39400 -18.87918 -18.50868 -17.42749 -16.73646 -16.65860 -16.31459 -15.83996 -14.91666 -14.65561 -14.23517 -14.20348 -13.93148 -13.27126 -13.09801 -12.97158 -12.83472 -12.68967 -12.41620 -12.25430 -12.17852 -11.94660 -11.88640 -11.61682 -11.50952 -11.40334 -11.37544 -11.02693 -10.62463 -10.42772 -8.30439 -6.48233 0.15701 1.40929 1.45539 1.53675 2.03064 2.06200 2.42464 2.99933 3.61265 3.73112 3.78419 4.05333 4.10660 4.37665 4.50946 4.57359 4.63500 4.65215 4.67819 4.74633 4.78947 4.86107 5.00404 5.08116 5.11515 5.23407 5.25078 5.34433 5.41532 5.45674 5.49534 5.53152 5.60121 5.88285 6.05148 6.57011 6.94110 7.23846 8.77477 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056756 B = 0.004048 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.217468 B = 6914.847675 C = 7096.906118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.362 6.362 13 C 0.474 3.526 14 O -0.564 6.564 15 C -0.204 4.204 16 C -0.030 4.030 17 C -0.069 4.069 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.119 4.119 22 H 0.022 0.978 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.272 0.728 26 H 0.160 0.840 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -4.067 19.371 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.278 6.278 13 C 0.322 3.678 14 O -0.459 6.459 15 C -0.222 4.222 16 C -0.048 4.048 17 C -0.087 4.087 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.163 4.163 21 C -0.157 4.157 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.177 0.823 27 H 0.131 0.869 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.486 -3.616 19.169 20.264 hybrid contribution -0.084 0.265 -1.224 1.255 sum 5.401 -3.351 17.945 19.037 Atomic orbital electron populations 1.21984 0.96689 1.00457 1.00800 1.20367 0.92140 0.92057 0.79260 0.97647 1.21287 1.33674 1.14054 0.89971 0.91382 1.25887 0.94623 0.95671 1.02251 1.70013 1.36512 1.23651 1.25388 0.85180 0.78791 0.78624 0.76482 1.18689 1.20064 1.19264 1.86567 1.76286 1.43411 1.21529 1.22505 0.74074 0.85192 0.86008 1.90741 1.51378 1.18152 1.85616 1.22110 1.08306 1.02481 0.89317 1.24094 0.87793 0.99615 0.93333 1.21183 0.96056 1.00756 0.90739 1.22473 0.97357 1.02282 0.93590 1.22517 0.95697 1.00858 0.96631 1.22406 0.99079 0.99457 0.95364 1.22225 0.95786 1.00394 0.97295 0.95918 0.93435 0.89909 0.91889 0.82255 0.86937 0.88289 0.91965 0.90298 0.90243 0.90687 0.90286 0.91990 0.89907 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.65 9.33 71.98 0.67 -6.98 16 2 C 0.22 12.47 2.56 29.85 0.08 12.54 16 3 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 4 C -0.55 -32.53 8.90 25.60 0.23 -32.31 16 5 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 8 Si 0.99 43.59 29.54 68.60 2.03 45.61 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 O -0.36 -18.69 9.87 -57.08 -0.56 -19.25 16 13 C 0.47 21.62 7.88 70.10 0.55 22.17 16 14 O -0.56 -29.15 15.48 19.72 0.31 -28.84 16 15 C -0.20 -6.49 9.77 23.40 0.23 -6.26 16 16 C -0.03 -0.77 7.98 24.53 0.20 -0.58 16 17 C -0.07 -1.22 3.24 -10.81 -0.04 -1.26 16 18 C -0.12 -1.84 6.36 31.69 0.20 -1.63 16 19 C -0.12 -1.43 6.91 31.91 0.22 -1.21 16 20 C -0.13 -1.64 6.83 31.67 0.22 -1.42 16 21 C -0.12 -1.89 6.45 31.32 0.20 -1.69 16 22 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.08 4.74 6.07 -2.38 -0.01 4.72 16 25 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.16 4.15 7.88 -2.91 -0.02 4.13 16 27 H 0.11 3.28 7.49 -2.91 -0.02 3.26 16 28 H 0.10 1.52 7.84 -2.39 -0.02 1.50 16 29 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.06 7.67 -2.39 -0.02 1.04 16 Total: -1.00 -68.98 302.26 6.26 -62.72 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.04 Total: 10.79 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.21 Total: -17.29 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.24 Total: -53.74 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.26 Total: -48.10 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -68.98 6.26 -62.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.427 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds