Wall clock time and date at job start Sun Mar 29 2020 22:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00173 * 2 1 4 4 H 1.48492 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47001 * 300.00022 * 3 2 1 6 6 H 1.48500 * 109.47395 * 59.99548 * 3 2 1 7 7 C 1.37880 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00059 * 180.02562 * 10 9 7 12 12 O 1.21595 * 120.00038 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99957 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.57943 * 105.75424 * 14 13 11 16 16 C 1.53064 * 86.72866 * 89.97536 * 15 14 13 17 17 C 1.52907 * 121.17777 * 150.58516 * 16 15 14 18 18 C 1.53958 * 86.78205 * 100.75092 * 17 16 15 19 19 C 1.52915 * 121.06536 * 259.12116 * 16 15 14 20 20 C 1.52909 * 88.07110 * 24.83053 * 16 15 14 21 21 H 0.97006 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46928 * 60.00123 * 9 7 2 23 23 H 1.08996 * 109.46916 * 300.00083 * 9 7 2 24 24 H 0.97005 * 120.00271 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99968 * 359.97438 * 13 11 10 26 26 H 1.09002 * 112.82315 * 334.66118 * 14 13 11 27 27 H 1.09006 * 113.66206 * 204.42289 * 15 14 13 28 28 H 1.09001 * 113.66131 * 335.46726 * 15 14 13 29 29 H 1.08994 * 113.66316 * 215.21977 * 17 16 15 30 30 H 1.08997 * 113.66044 * 346.28226 * 17 16 15 31 31 H 1.09000 * 113.57861 * 270.13288 * 18 17 16 32 32 H 1.08990 * 113.65166 * 139.34938 * 18 17 16 33 33 H 1.09004 * 113.66330 * 13.63126 * 19 16 15 34 34 H 1.09001 * 113.65876 * 144.67975 * 19 16 15 35 35 H 1.09000 * 113.66588 * 220.69917 * 20 16 15 36 36 H 1.09002 * 113.66049 * 89.63812 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7536 -4.8834 0.0019 12 8 0.5582 -5.1056 0.0029 13 7 2.6294 -5.9078 0.0022 14 6 2.1410 -7.2890 0.0032 15 6 2.2964 -7.9981 -1.3544 16 6 3.6747 -8.4474 -0.8630 17 6 4.2995 -9.7565 -1.3466 18 6 5.1442 -8.8980 -2.3057 19 6 4.9469 -7.7325 -1.3196 20 6 3.1552 -8.3004 0.5677 21 1 -0.4851 0.8401 -0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 3.1566 -3.4355 0.0010 25 1 3.5831 -5.7306 0.0017 26 1 1.1442 -7.3847 0.4335 27 1 1.5953 -8.8197 -1.5017 28 1 2.3348 -7.3150 -2.2030 29 1 4.8875 -10.2683 -0.5848 30 1 3.5956 -10.4158 -1.8544 31 1 4.6722 -8.7341 -3.2745 32 1 6.1797 -9.2272 -2.3902 33 1 4.7601 -6.7749 -1.8058 34 1 5.7167 -7.6753 -0.5500 35 1 3.8789 -7.8583 1.2526 36 1 2.6959 -9.2070 0.9616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845155106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:26 Heat of formation + Delta-G solvation = 1.335226 kcal Electronic energy + Delta-G solvation = -16767.242057 eV Core-core repulsion = 14059.390177 eV Total energy + Delta-G solvation = -2707.851880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75335 -38.74303 -35.44363 -34.01974 -32.51674 -31.61959 -27.08395 -25.88919 -25.85816 -24.22326 -22.62612 -20.70780 -20.03550 -18.11203 -18.04962 -16.06472 -15.81278 -15.59963 -15.26413 -14.81018 -14.49363 -14.02532 -13.54248 -12.98045 -12.87069 -12.56263 -12.36551 -12.00436 -11.93347 -11.68900 -11.29453 -11.10087 -10.90178 -10.88032 -10.33345 -10.28051 -10.19900 -9.80822 -9.35786 -9.32253 -8.72470 -8.61535 -7.72302 -6.13039 -4.19342 3.25618 3.31166 3.34576 3.42001 3.95728 4.29987 4.33981 4.38167 4.49311 4.67772 4.71770 4.95016 5.16196 5.23157 5.31719 5.50826 5.54633 5.62117 5.66513 5.73977 5.75136 5.86782 5.90987 6.03733 6.15905 6.25124 6.36769 7.02314 7.18307 7.55711 7.59717 7.60697 7.95190 8.08514 8.80046 8.99179 9.37720 9.52067 10.97315 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044373 B = 0.004461 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.858799 B = 6274.981399 C = 6669.019085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.694 3.306 12 O -0.601 6.601 13 N -0.737 5.737 14 C 0.148 3.852 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.128 4.128 18 C -0.139 4.139 19 C -0.121 4.121 20 C -0.136 4.136 21 H 0.265 0.735 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.386 0.614 25 H 0.391 0.609 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 -17.254 -1.724 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.394 3.606 12 O -0.480 6.480 13 N -0.393 5.393 14 C 0.041 3.959 15 C -0.170 4.170 16 C -0.104 4.104 17 C -0.166 4.166 18 C -0.176 4.176 19 C -0.158 4.158 20 C -0.174 4.174 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.218 0.782 25 H 0.224 0.776 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.539 -17.262 -1.716 19.796 hybrid contribution 1.330 1.082 -0.044 1.715 sum 10.869 -16.180 -1.760 19.571 Atomic orbital electron populations 1.69994 1.06088 1.27117 1.49115 1.24947 0.94906 0.99394 0.94809 0.86361 0.79797 0.83012 0.77717 1.19683 1.20830 1.20819 1.21271 0.93292 0.90452 1.52890 0.91920 1.18979 0.87801 0.81091 0.97598 1.45713 1.10730 1.04434 1.77306 1.16161 0.85234 0.81048 0.78204 1.90865 1.14260 1.84196 1.58658 1.44844 1.08575 1.04342 1.81540 1.21478 0.98448 0.80190 0.95822 1.23229 0.94784 1.00148 0.98820 1.22527 0.94547 0.96953 0.96416 1.22746 0.99006 0.95955 0.98852 1.22784 0.99886 0.97058 0.97881 1.22690 0.96253 0.98044 0.98843 1.23199 0.98852 0.99369 0.96014 0.92541 0.95762 0.95748 0.78235 0.77603 0.88318 0.89300 0.90923 0.90208 0.91557 0.90326 0.91750 0.91120 0.89927 0.90968 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -15.98 5.55 -66.41 -0.37 -16.35 16 11 C 0.69 14.70 8.57 -86.92 -0.74 13.96 16 12 O -0.60 -15.39 15.96 5.28 0.08 -15.30 16 13 N -0.74 -11.39 5.26 -57.71 -0.30 -11.69 16 14 C 0.15 2.00 4.29 -66.95 -0.29 1.71 16 15 C -0.13 -1.54 7.65 -26.20 -0.20 -1.74 16 16 C -0.10 -1.00 1.03 -154.63 -0.16 -1.16 16 17 C -0.13 -1.06 7.84 -26.28 -0.21 -1.27 16 18 C -0.14 -1.16 8.08 -25.75 -0.21 -1.37 16 19 C -0.12 -1.10 7.21 -26.28 -0.19 -1.29 16 20 C -0.14 -1.37 7.58 -26.28 -0.20 -1.57 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 25 H 0.39 4.99 8.11 -40.82 -0.33 4.66 16 26 H 0.10 1.54 7.50 -51.93 -0.39 1.15 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -32.39 300.88 -8.64 -41.03 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.67 Total: 6.48 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.64 Total: 0.97 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.06 Total: -53.73 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.39 -8.64 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845155106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.366 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds