Wall clock time and date at job start Sun Mar 29 2020 22:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00173 * 2 1 4 4 H 1.48492 * 109.47457 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47001 * 300.00022 * 3 2 1 6 6 H 1.48500 * 109.47395 * 59.99548 * 3 2 1 7 7 C 1.37880 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99876 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00059 * 180.02562 * 10 9 7 12 12 O 1.21595 * 120.00038 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99957 * 179.97438 * 13 11 10 15 15 C 1.53950 * 113.57943 * 105.75424 * 14 13 11 16 16 C 1.53064 * 86.72866 * 89.97536 * 15 14 13 17 17 C 1.52907 * 121.17777 * 150.58516 * 16 15 14 18 18 C 1.53958 * 86.78205 * 100.75092 * 17 16 15 19 19 C 1.52915 * 121.06536 * 259.12116 * 16 15 14 20 20 C 1.52909 * 88.07110 * 24.83053 * 16 15 14 21 21 H 0.97006 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46928 * 60.00123 * 9 7 2 23 23 H 1.08996 * 109.46916 * 300.00083 * 9 7 2 24 24 H 0.97005 * 120.00271 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99968 * 359.97438 * 13 11 10 26 26 H 1.09002 * 112.82315 * 334.66118 * 14 13 11 27 27 H 1.09006 * 113.66206 * 204.42289 * 15 14 13 28 28 H 1.09001 * 113.66131 * 335.46726 * 15 14 13 29 29 H 1.08994 * 113.66316 * 215.21977 * 17 16 15 30 30 H 1.08997 * 113.66044 * 346.28226 * 17 16 15 31 31 H 1.09000 * 113.57861 * 270.13288 * 18 17 16 32 32 H 1.08990 * 113.65166 * 139.34938 * 18 17 16 33 33 H 1.09004 * 113.66330 * 13.63126 * 19 16 15 34 34 H 1.09001 * 113.65876 * 144.67975 * 19 16 15 35 35 H 1.09000 * 113.66588 * 220.69917 * 20 16 15 36 36 H 1.09002 * 113.66049 * 89.63812 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7536 -4.8834 0.0019 12 8 0.5582 -5.1056 0.0029 13 7 2.6294 -5.9078 0.0022 14 6 2.1410 -7.2890 0.0032 15 6 2.2964 -7.9981 -1.3544 16 6 3.6747 -8.4474 -0.8630 17 6 4.2995 -9.7565 -1.3466 18 6 5.1442 -8.8980 -2.3057 19 6 4.9469 -7.7325 -1.3196 20 6 3.1552 -8.3004 0.5677 21 1 -0.4851 0.8401 -0.0004 22 1 0.6239 -2.5575 -0.8881 23 1 0.6246 -2.5563 0.8919 24 1 3.1566 -3.4355 0.0010 25 1 3.5831 -5.7306 0.0017 26 1 1.1442 -7.3847 0.4335 27 1 1.5953 -8.8197 -1.5017 28 1 2.3348 -7.3150 -2.2030 29 1 4.8875 -10.2683 -0.5848 30 1 3.5956 -10.4158 -1.8544 31 1 4.6722 -8.7341 -3.2745 32 1 6.1797 -9.2272 -2.3902 33 1 4.7601 -6.7749 -1.8058 34 1 5.7167 -7.6753 -0.5500 35 1 3.8789 -7.8583 1.2526 36 1 2.6959 -9.2070 0.9616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845155106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:25 Heat of formation + Delta-G solvation = -21.232535 kcal Electronic energy + Delta-G solvation = -16768.220668 eV Core-core repulsion = 14059.390177 eV Total energy + Delta-G solvation = -2708.830491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76589 -40.31928 -36.59818 -35.96378 -34.44960 -33.11054 -29.13680 -26.77980 -26.56211 -25.40021 -24.39845 -22.14205 -21.36919 -19.87751 -18.88904 -18.04011 -17.29491 -16.63600 -16.48433 -16.10927 -16.10105 -15.55502 -15.02178 -14.45272 -14.17772 -14.03368 -13.62022 -13.42770 -13.05223 -12.86868 -12.81336 -12.73409 -12.21298 -12.06447 -11.93539 -11.44412 -11.28006 -11.03446 -10.99043 -10.81288 -10.67897 -10.17974 -9.56798 -8.28114 -6.44637 1.43903 1.45608 1.58813 1.87973 2.23057 2.40074 3.06960 3.48124 3.51382 3.57874 3.70765 3.92499 3.94869 4.02554 4.60311 4.63275 4.78778 4.83610 4.89887 4.95063 4.96798 5.05461 5.07771 5.12730 5.15577 5.24843 5.27001 5.49468 5.53182 5.60848 5.67273 5.77922 5.85470 6.28240 6.67435 7.24737 7.32301 7.73369 8.84631 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044373 B = 0.004461 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.858799 B = 6274.981399 C = 6669.019085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.650 6.650 13 N -0.712 5.712 14 C 0.125 3.875 15 C -0.130 4.130 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.117 4.117 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.015 1.015 24 H 0.404 0.596 25 H 0.408 0.592 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.831 -17.892 -1.549 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.532 6.532 13 N -0.368 5.368 14 C 0.019 3.981 15 C -0.169 4.169 16 C -0.100 4.100 17 C -0.157 4.157 18 C -0.176 4.176 19 C -0.162 4.162 20 C -0.155 4.155 21 H 0.078 0.922 22 H 0.002 0.998 23 H 0.003 0.997 24 H 0.239 0.761 25 H 0.244 0.756 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.598 -17.961 -1.544 21.993 hybrid contribution 0.356 1.186 -0.112 1.243 sum 12.954 -16.775 -1.656 21.259 Atomic orbital electron populations 1.70155 1.08311 1.28516 1.50023 1.26078 0.95784 1.03903 0.93844 0.85075 0.79031 0.77175 0.77686 1.17637 1.20446 1.20398 1.21629 0.94309 0.90428 1.52819 0.89815 1.18416 0.88124 0.83393 0.93908 1.45297 1.10851 1.03815 1.77726 1.16335 0.85155 0.81621 0.77756 1.90830 1.16788 1.84922 1.60709 1.44590 1.08625 1.03939 1.79609 1.21804 0.98604 0.79622 0.98090 1.23217 0.97011 0.99887 0.96781 1.22455 0.93524 0.98463 0.95555 1.22744 0.98834 0.95146 0.98984 1.22781 1.00700 0.96641 0.97429 1.22774 0.96247 0.97675 0.99461 1.23154 0.97462 0.98415 0.96491 0.92231 0.99762 0.99670 0.76077 0.75580 0.90972 0.88161 0.92887 0.88626 0.91255 0.91043 0.90442 0.92429 0.88387 0.89953 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.69 29.54 68.60 2.03 44.72 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.70 9.28 25.60 0.24 -30.46 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.28 16.22 5.43 85.64 0.46 16.68 16 10 N -0.72 -32.29 5.55 -482.29 -2.68 -34.97 16 11 C 0.69 30.12 8.57 179.05 1.53 31.65 16 12 O -0.65 -34.97 15.96 -4.02 -0.06 -35.04 16 13 N -0.71 -21.78 5.26 -454.75 -2.39 -24.17 16 14 C 0.13 3.34 4.29 45.63 0.20 3.53 16 15 C -0.13 -2.96 7.65 30.94 0.24 -2.73 16 16 C -0.10 -1.69 1.03 -52.26 -0.05 -1.74 16 17 C -0.12 -1.59 7.84 30.89 0.24 -1.35 16 18 C -0.14 -1.94 8.08 31.23 0.25 -1.68 16 19 C -0.12 -1.95 7.21 30.89 0.22 -1.73 16 20 C -0.12 -2.06 7.58 30.89 0.23 -1.82 16 21 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 22 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 23 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 24 H 0.40 14.86 8.34 -92.70 -0.77 14.09 16 25 H 0.41 9.81 8.11 -92.71 -0.75 9.06 16 26 H 0.07 2.33 7.50 -2.39 -0.02 2.31 16 27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -72.91 300.88 0.76 -72.15 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.45 Total: 22.99 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.03 Total: 11.01 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.78 Total: -115.83 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.06 Total: -35.04 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.91 0.76 -72.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845155106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.918 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds