Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 H 1.08990 * 115.55223 * 34.41397 * 15 13 12 17 17 C 1.52996 * 117.49274 * 248.73860 * 15 13 12 18 18 C 1.53001 * 117.49332 * 180.08576 * 15 13 12 19 19 H 1.09003 * 117.50475 * 359.97438 * 18 15 13 20 20 C 1.53007 * 117.49528 * 214.97839 * 18 15 13 21 21 C 1.53777 * 113.61234 * 159.13568 * 20 18 15 22 22 C 1.53957 * 87.01904 * 220.04452 * 21 20 18 23 23 C 1.53780 * 87.10922 * 25.36660 * 22 21 20 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08997 * 117.50670 * 0.02562 * 17 15 13 29 29 H 1.09004 * 117.49567 * 145.00229 * 17 15 13 30 30 H 1.08998 * 112.84746 * 290.33076 * 20 18 15 31 31 H 1.08994 * 113.61838 * 334.56848 * 21 20 18 32 32 H 1.09007 * 113.61135 * 105.47168 * 21 20 18 33 33 H 1.08998 * 113.53708 * 270.80882 * 22 21 20 34 34 H 1.09003 * 113.66562 * 139.93246 * 22 21 20 35 35 H 1.08999 * 113.61512 * 220.09105 * 23 22 21 36 36 H 1.09000 * 113.69386 * 89.19234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 1 3.4142 -1.4055 3.4138 17 6 1.7536 -0.6509 4.7337 18 6 2.9287 0.3295 4.7640 19 1 2.7036 1.3895 4.6459 20 6 4.0974 0.0029 5.6960 21 6 4.5476 1.1929 6.5596 22 6 5.9930 0.7292 6.3025 23 6 5.4718 0.0786 5.0103 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 0.7550 -0.2364 4.5957 29 1 1.8133 -1.5284 5.3775 30 1 3.9424 -0.9146 6.2635 31 1 4.3158 2.1634 6.1209 32 1 4.2423 1.1153 7.6032 33 1 6.3568 0.0109 7.0372 34 1 6.6908 1.5483 6.1283 35 1 5.9114 -0.8974 4.8048 36 1 5.4927 0.7427 4.1462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845467330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = -58.236332 kcal Electronic energy + Delta-G solvation = -16807.258064 eV Core-core repulsion = 14064.530217 eV Total energy + Delta-G solvation = -2742.727848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98526 -38.83139 -36.29710 -35.04853 -33.22281 -29.61939 -26.58865 -25.66204 -25.31212 -24.34531 -21.48871 -20.79549 -19.47066 -19.22736 -17.14385 -16.59532 -15.68651 -15.55994 -15.05500 -14.76790 -14.53177 -13.55587 -13.09864 -12.57581 -12.49333 -12.40221 -12.19632 -11.82572 -11.70796 -11.20914 -11.08146 -10.94481 -10.78833 -10.71641 -10.56694 -10.34614 -10.27330 -9.94334 -9.84424 -9.55411 -9.49094 -8.88513 -8.47891 -6.17137 -4.23910 2.84670 3.25547 3.30619 3.34672 3.56791 3.93778 4.33521 4.51896 4.63532 4.64182 4.81571 5.01935 5.05307 5.15482 5.21531 5.39358 5.60693 5.65691 5.69400 5.73774 5.80406 5.88359 5.92386 6.12464 6.14146 6.28250 6.46908 6.65993 6.90246 6.93367 7.20127 7.61675 7.74588 7.96122 8.16201 8.67945 8.92385 9.41557 10.90402 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039414 B = 0.004906 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.243403 B = 5706.174688 C = 6035.361921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.284 1.284 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.523 6.523 15 C -0.157 4.157 16 H 0.129 0.871 17 C -0.149 4.149 18 C -0.112 4.112 19 H 0.118 0.882 20 C -0.082 4.082 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.037 0.963 25 H 0.015 0.985 26 H 0.099 0.901 27 H 0.266 0.734 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -2.358 15.819 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.209 1.209 12 O -0.269 6.269 13 C 0.324 3.676 14 O -0.414 6.414 15 C -0.176 4.176 16 H 0.147 0.853 17 C -0.186 4.186 18 C -0.130 4.130 19 H 0.136 0.864 20 C -0.100 4.100 21 C -0.170 4.170 22 C -0.182 4.182 23 C -0.173 4.173 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.384 -1.900 15.597 16.609 hybrid contribution 0.156 -0.333 -1.011 1.076 sum 5.540 -2.233 14.585 15.761 Atomic orbital electron populations 1.22154 0.97584 1.00093 1.01345 1.20640 0.91400 0.93916 0.77855 0.93623 1.21036 1.32430 1.13472 0.88913 0.91313 1.24894 0.94917 0.95118 0.99065 1.69904 1.36075 1.22639 1.24144 0.86268 0.78542 0.79910 0.81387 1.20395 1.19576 1.20938 1.86473 1.75605 1.43547 1.21228 1.22311 0.74500 0.85391 0.85387 1.90578 1.49190 1.16909 1.84726 1.21781 1.05143 1.03893 0.86817 0.85334 1.23099 0.95470 1.01722 0.98313 1.22479 0.96758 0.97831 0.95969 0.86379 1.22178 0.92720 0.98905 0.96175 1.22978 0.96016 0.98331 0.99684 1.22848 0.96688 1.00544 0.98091 1.22939 0.95571 1.01362 0.97458 0.94422 0.96606 0.88237 0.92416 0.88264 0.87729 0.89012 0.89834 0.91577 0.90413 0.91508 0.91478 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.93 2.56 -27.89 -0.07 5.86 16 3 H 0.05 1.39 7.16 -51.92 -0.37 1.02 16 4 C -0.52 -14.94 8.90 -34.44 -0.31 -15.24 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 O -0.35 -8.76 9.86 -39.27 -0.39 -9.14 16 13 C 0.48 10.48 7.71 36.01 0.28 10.76 16 14 O -0.52 -12.74 15.48 -18.75 -0.29 -13.03 16 15 C -0.16 -2.48 5.85 -91.77 -0.54 -3.02 16 16 H 0.13 1.83 8.14 -51.93 -0.42 1.41 16 17 C -0.15 -1.90 9.92 -26.70 -0.26 -2.17 16 18 C -0.11 -1.48 5.05 -90.58 -0.46 -1.94 16 19 H 0.12 1.75 7.50 -51.93 -0.39 1.36 16 20 C -0.08 -0.85 3.87 -89.81 -0.35 -1.19 16 21 C -0.13 -1.24 7.65 -25.83 -0.20 -1.44 16 22 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 23 C -0.14 -1.43 7.49 -25.92 -0.19 -1.63 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.08 0.83 7.98 -51.93 -0.41 0.41 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 303.50 15.07 4.57 4.57 Total: -1.00 -30.82 303.50 -8.23 -39.05 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.68 Total: 0.79 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.05 Total: -13.52 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.68 Total: -22.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.82 -8.23 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845467330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.183 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds