Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 H 1.08990 * 115.55223 * 34.41397 * 15 13 12 17 17 C 1.52996 * 117.49274 * 248.73860 * 15 13 12 18 18 C 1.53001 * 117.49332 * 180.08576 * 15 13 12 19 19 H 1.09003 * 117.50475 * 359.97438 * 18 15 13 20 20 C 1.53007 * 117.49528 * 214.97839 * 18 15 13 21 21 C 1.53777 * 113.61234 * 159.13568 * 20 18 15 22 22 C 1.53957 * 87.01904 * 220.04452 * 21 20 18 23 23 C 1.53780 * 87.10922 * 25.36660 * 22 21 20 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08997 * 117.50670 * 0.02562 * 17 15 13 29 29 H 1.09004 * 117.49567 * 145.00229 * 17 15 13 30 30 H 1.08998 * 112.84746 * 290.33076 * 20 18 15 31 31 H 1.08994 * 113.61838 * 334.56848 * 21 20 18 32 32 H 1.09007 * 113.61135 * 105.47168 * 21 20 18 33 33 H 1.08998 * 113.53708 * 270.80882 * 22 21 20 34 34 H 1.09003 * 113.66562 * 139.93246 * 22 21 20 35 35 H 1.08999 * 113.61512 * 220.09105 * 23 22 21 36 36 H 1.09000 * 113.69386 * 89.19234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 1 3.4142 -1.4055 3.4138 17 6 1.7536 -0.6509 4.7337 18 6 2.9287 0.3295 4.7640 19 1 2.7036 1.3895 4.6459 20 6 4.0974 0.0029 5.6960 21 6 4.5476 1.1929 6.5596 22 6 5.9930 0.7292 6.3025 23 6 5.4718 0.0786 5.0103 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 0.7550 -0.2364 4.5957 29 1 1.8133 -1.5284 5.3775 30 1 3.9424 -0.9146 6.2635 31 1 4.3158 2.1634 6.1209 32 1 4.2423 1.1153 7.6032 33 1 6.3568 0.0109 7.0372 34 1 6.6908 1.5483 6.1283 35 1 5.9114 -0.8974 4.8048 36 1 5.4927 0.7427 4.1462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845467330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = -74.329586 kcal Electronic energy + Delta-G solvation = -16807.955920 eV Core-core repulsion = 14064.530217 eV Total energy + Delta-G solvation = -2743.425703 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55385 -39.99243 -37.87586 -36.52421 -35.35122 -31.75633 -27.68142 -27.44853 -26.43823 -25.72546 -23.15031 -22.05063 -20.96370 -20.26214 -18.90122 -18.57377 -17.44672 -16.78818 -16.52276 -16.37859 -15.91040 -15.07801 -14.56513 -14.09548 -14.05889 -13.48876 -13.31045 -13.30018 -13.25046 -12.97477 -12.86440 -12.71270 -12.41613 -12.17189 -11.94291 -11.64357 -11.55542 -11.38678 -11.36979 -11.03731 -10.90114 -10.70683 -10.62971 -8.31425 -6.49020 1.19192 1.40396 1.42874 1.54626 1.94285 2.39070 2.73625 2.99077 3.54464 3.66833 3.74268 3.90765 3.97790 4.11731 4.16804 4.25826 4.45876 4.50657 4.72443 4.74883 4.79446 4.87513 4.90965 4.93065 5.00780 5.13300 5.13873 5.14456 5.23145 5.39510 5.45243 5.58568 5.68328 5.88144 6.05370 6.56381 6.94876 7.23380 8.76605 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039414 B = 0.004906 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.243403 B = 5706.174688 C = 6035.361921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.986 3.014 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.273 1.273 12 O -0.361 6.361 13 C 0.472 3.528 14 O -0.558 6.558 15 C -0.177 4.177 16 H 0.148 0.852 17 C -0.126 4.126 18 C -0.102 4.102 19 H 0.094 0.906 20 C -0.076 4.076 21 C -0.133 4.133 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.047 0.953 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.272 0.728 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -4.177 17.106 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.198 1.198 12 O -0.278 6.278 13 C 0.318 3.682 14 O -0.451 6.451 15 C -0.196 4.196 16 H 0.166 0.834 17 C -0.162 4.162 18 C -0.120 4.120 19 H 0.112 0.888 20 C -0.094 4.094 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.164 0.836 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.112 -3.717 16.910 18.361 hybrid contribution -0.076 0.315 -1.355 1.394 sum 6.036 -3.402 15.555 17.028 Atomic orbital electron populations 1.21972 0.96652 1.00449 1.00767 1.20371 0.92151 0.91974 0.79292 0.97792 1.21301 1.33578 1.13991 0.89952 0.91447 1.25876 0.94605 0.95668 1.02220 1.70023 1.36494 1.23717 1.25309 0.85141 0.78160 0.78927 0.76929 1.19681 1.18574 1.19837 1.86467 1.76052 1.43744 1.21502 1.23543 0.73347 0.85220 0.86086 1.90552 1.50768 1.18522 1.85222 1.21876 1.07601 1.05484 0.84611 0.83405 1.23323 0.94430 1.02682 0.95798 1.22557 0.98393 0.96537 0.94550 0.88753 1.22290 0.90935 1.00460 0.95729 1.22976 0.96352 0.97283 1.00421 1.22848 0.96379 1.00741 0.97310 1.22950 0.96384 1.01489 0.97473 0.93414 0.95950 0.89951 0.91907 0.89215 0.83610 0.86320 0.91231 0.89704 0.88378 0.91569 0.90589 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.54 9.33 71.98 0.67 -6.86 16 2 C 0.22 12.39 2.56 29.85 0.08 12.47 16 3 H 0.00 0.27 7.16 -2.38 -0.02 0.26 16 4 C -0.55 -32.27 8.90 25.60 0.23 -32.04 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.51 16 8 Si 0.99 43.48 29.54 68.60 2.03 45.50 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 O -0.36 -18.48 9.86 -51.45 -0.51 -18.99 16 13 C 0.47 21.20 7.71 71.24 0.55 21.75 16 14 O -0.56 -28.56 15.48 21.98 0.34 -28.22 16 15 C -0.18 -5.45 5.85 -11.54 -0.07 -5.52 16 16 H 0.15 3.96 8.14 -2.39 -0.02 3.94 16 17 C -0.13 -2.90 9.92 30.62 0.30 -2.60 16 18 C -0.10 -2.57 5.05 -10.77 -0.05 -2.62 16 19 H 0.09 2.85 7.50 -2.39 -0.02 2.83 16 20 C -0.08 -1.38 3.87 -10.27 -0.04 -1.42 16 21 C -0.13 -2.20 7.65 31.18 0.24 -1.96 16 22 C -0.14 -2.08 8.09 31.18 0.25 -1.83 16 23 C -0.15 -2.85 7.49 31.12 0.23 -2.62 16 24 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 4.69 6.07 -2.39 -0.01 4.68 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.15 2.22 8.13 -2.39 -0.02 2.20 16 30 H 0.12 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.07 1.34 7.98 -2.39 -0.02 1.32 16 32 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -68.88 303.50 5.99 -62.89 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.05 Total: 14.24 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 2.84 Total: -21.91 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.24 Total: -53.51 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.17 Total: -47.21 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.88 5.99 -62.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845467330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.439 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds