Wall clock time and date at job start Sun Mar 29 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 C 1.53892 * 113.58553 * 279.21057 * 16 14 13 18 18 C 1.53421 * 86.82600 * 220.45857 * 17 16 14 19 19 C 1.52461 * 128.60904 * 165.09647 * 18 17 16 20 20 C 1.52458 * 128.52309 * 245.02072 * 18 17 16 21 21 C 1.53258 * 87.72087 * 25.01795 * 18 17 16 22 22 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 23 23 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 25 25 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 26 26 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08997 * 112.83278 * 50.33024 * 16 14 13 29 29 H 1.08992 * 113.65285 * 334.92977 * 17 16 14 30 30 H 1.09006 * 113.64558 * 105.93925 * 17 16 14 31 31 H 1.08993 * 117.51653 * 224.96392 * 19 18 17 32 32 H 1.08999 * 117.51017 * 10.07473 * 19 18 17 33 33 H 1.09002 * 117.51172 * 349.79725 * 20 18 17 34 34 H 1.09001 * 117.51708 * 134.86416 * 20 18 17 35 35 H 1.08994 * 113.65301 * 220.48284 * 21 18 17 36 36 H 1.08998 * 113.72543 * 89.48914 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 6 0.6290 4.8154 -2.7061 18 6 -0.7563 5.2724 -3.1812 19 6 -1.2815 6.6931 -3.3556 20 6 -1.1727 5.7596 -4.5646 21 6 -1.3506 4.1288 -2.3518 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.8288 -0.0530 2.9544 28 1 0.0690 2.7873 -3.3930 29 1 0.9499 5.2866 -1.7771 30 1 1.3916 4.8478 -3.4843 31 1 -2.2796 6.9111 -2.9760 32 1 -0.5617 7.5084 -3.2827 33 1 -0.3815 5.9611 -5.2867 34 1 -2.0991 5.3632 -4.9803 35 1 -2.1727 3.6115 -2.8462 36 1 -1.5822 4.4071 -1.3238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:50 Heat of formation + Delta-G solvation = -53.078973 kcal Electronic energy + Delta-G solvation = -17213.009448 eV Core-core repulsion = 14470.505241 eV Total energy + Delta-G solvation = -2742.504208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23773 -38.61964 -35.71340 -33.63778 -33.34349 -31.31110 -27.39809 -25.72807 -24.97533 -22.99461 -22.53894 -20.44810 -19.27754 -18.32629 -17.06449 -16.55037 -15.65525 -15.47961 -15.23956 -14.70949 -14.50584 -13.36342 -12.90089 -12.57563 -12.40346 -12.31642 -11.81738 -11.58962 -11.54592 -11.33049 -11.19996 -11.14122 -10.91339 -10.64946 -10.36642 -10.26703 -10.24265 -9.76664 -9.70863 -9.42400 -9.28024 -8.76816 -8.43267 -6.16627 -4.23464 3.04975 3.25300 3.30844 3.34733 3.56774 3.87798 4.30436 4.35677 4.58495 4.76630 4.83847 4.91186 5.15347 5.43788 5.52259 5.63324 5.74455 5.77833 5.83708 5.91938 6.01434 6.03836 6.24269 6.25425 6.32246 6.41473 6.49255 6.90237 7.00169 7.19882 7.30774 7.64363 7.76866 7.99147 8.19313 8.69258 8.94585 9.41850 10.90196 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.005845 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.230042 B = 4788.887360 C = 5324.780897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.460 3.540 15 O -0.518 6.518 16 C -0.107 4.107 17 C -0.079 4.079 18 C -0.163 4.163 19 C -0.166 4.166 20 C -0.152 4.152 21 C -0.077 4.077 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.266 0.734 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 7.495 -10.346 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.271 6.271 14 C 0.303 3.697 15 O -0.408 6.408 16 C -0.126 4.126 17 C -0.116 4.116 18 C -0.163 4.163 19 C -0.203 4.203 20 C -0.189 4.189 21 C -0.115 4.115 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.382 7.358 -9.840 14.334 hybrid contribution 0.889 -0.163 0.259 0.940 sum -6.492 7.195 -9.581 13.628 Atomic orbital electron populations 1.21857 0.98395 0.98938 1.00768 1.22011 0.92625 0.99423 1.03286 1.20652 0.94966 0.88775 0.78875 0.93626 1.21053 0.89776 1.38974 1.06041 0.91386 1.24887 0.99182 0.94799 0.95090 1.69896 1.35356 1.37989 1.09378 0.86297 0.83982 0.77676 0.78325 1.20437 1.20958 1.19604 1.86485 1.34427 1.62258 1.43904 1.23093 0.80709 0.76570 0.89308 1.90585 1.55685 1.58572 1.35932 1.22287 0.98162 0.96142 0.95990 1.22407 0.94480 0.92851 1.01871 1.22204 0.98094 0.96084 0.99879 1.22788 1.02360 0.92904 1.02219 1.22781 1.02768 1.03032 0.90291 1.22437 0.94948 0.93368 1.00700 0.94926 0.94865 0.92843 0.94014 0.87411 0.92431 0.86476 0.89075 0.90287 0.88734 0.88701 0.88592 0.88664 0.90940 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.57 37.16 0.32 -2.86 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.85 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.69 8.89 -34.44 -0.31 -14.99 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.26 11.30 55.43 0.63 -24.63 16 9 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 O -0.35 -8.54 9.81 -39.28 -0.39 -8.92 16 14 C 0.46 9.63 5.94 36.00 0.21 9.85 16 15 O -0.52 -12.01 13.05 -18.75 -0.24 -12.26 16 16 C -0.11 -1.64 4.25 -90.85 -0.39 -2.03 16 17 C -0.08 -1.07 7.66 -26.05 -0.20 -1.27 16 18 C -0.16 -1.91 3.09 -154.71 -0.48 -2.38 16 19 C -0.17 -1.64 10.53 -26.94 -0.28 -1.92 16 20 C -0.15 -1.43 10.53 -26.94 -0.28 -1.72 16 21 C -0.08 -1.04 7.42 -26.13 -0.19 -1.24 16 22 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.25 7.80 -51.93 -0.40 0.84 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.11 2.94 5.96 -51.93 -0.31 2.63 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.50 7.44 -51.93 -0.39 1.11 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -29.92 296.83 -8.01 -37.94 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.56 Total: 1.93 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.90 Total: -14.64 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.63 Total: -21.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.92 -8.01 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.144 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds