Wall clock time and date at job start Sun Mar 29 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34237 * 116.99443 * 90.00402 * 13 3 2 15 15 O 1.20822 * 120.00184 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99347 * 180.02562 * 14 13 3 17 17 C 1.53892 * 113.58553 * 279.21057 * 16 14 13 18 18 C 1.53421 * 86.82600 * 220.45857 * 17 16 14 19 19 C 1.52461 * 128.60904 * 165.09647 * 18 17 16 20 20 C 1.52458 * 128.52309 * 245.02072 * 18 17 16 21 21 C 1.53258 * 87.72087 * 25.01795 * 18 17 16 22 22 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 23 23 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 25 25 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 26 26 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.08997 * 112.83278 * 50.33024 * 16 14 13 29 29 H 1.08992 * 113.65285 * 334.92977 * 17 16 14 30 30 H 1.09006 * 113.64558 * 105.93925 * 17 16 14 31 31 H 1.08993 * 117.51653 * 224.96392 * 19 18 17 32 32 H 1.08999 * 117.51017 * 10.07473 * 19 18 17 33 33 H 1.09002 * 117.51172 * 349.79725 * 20 18 17 34 34 H 1.09001 * 117.51708 * 134.86416 * 20 18 17 35 35 H 1.08994 * 113.65301 * 220.48284 * 21 18 17 36 36 H 1.08998 * 113.72543 * 89.48914 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4361 2.1285 2.0883 11 1 6.4412 -0.2952 2.1653 12 1 6.6156 0.8506 0.0352 13 8 1.6560 2.0916 -1.2408 14 6 0.4728 2.7255 -1.2560 15 8 -0.2191 2.7371 -0.2656 16 6 0.0072 3.4216 -2.5088 17 6 0.6290 4.8154 -2.7061 18 6 -0.7563 5.2724 -3.1812 19 6 -1.2815 6.6931 -3.3556 20 6 -1.1727 5.7596 -4.5646 21 6 -1.3506 4.1288 -2.3518 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 3.8288 -0.0530 2.9544 28 1 0.0690 2.7873 -3.3930 29 1 0.9499 5.2866 -1.7771 30 1 1.3916 4.8478 -3.4843 31 1 -2.2796 6.9111 -2.9760 32 1 -0.5617 7.5084 -3.2827 33 1 -0.3815 5.9611 -5.2867 34 1 -2.0991 5.3632 -4.9803 35 1 -2.1727 3.6115 -2.8462 36 1 -1.5822 4.4071 -1.3238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850979917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:50 Heat of formation + Delta-G solvation = -68.465665 kcal Electronic energy + Delta-G solvation = -17213.676665 eV Core-core repulsion = 14470.505241 eV Total energy + Delta-G solvation = -2743.171425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.72292 -39.96457 -37.53843 -35.49938 -34.55795 -33.32330 -29.42878 -26.82127 -26.49761 -24.92170 -23.28766 -22.25183 -21.04550 -19.33739 -18.88088 -18.45322 -17.38079 -17.04095 -16.42927 -16.04519 -15.99731 -15.06334 -14.82103 -14.10111 -13.84859 -13.52992 -13.38091 -13.30596 -13.06146 -12.95302 -12.82968 -12.55888 -12.50320 -12.27815 -12.13680 -11.76547 -11.50543 -11.34403 -11.28840 -10.94172 -10.82070 -10.57326 -10.50302 -8.27976 -6.45000 1.37920 1.41083 1.42806 1.54489 2.07085 2.42365 2.88953 3.01498 3.35551 3.52689 3.65707 3.87005 3.97619 4.21760 4.35644 4.38043 4.38578 4.57948 4.72264 4.77582 4.80235 4.83167 4.84587 5.00847 5.02488 5.07160 5.20560 5.21756 5.31402 5.33656 5.39075 5.51205 5.66477 5.98323 6.15153 6.60462 7.03552 7.27626 8.78898 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.005845 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.230042 B = 4788.887360 C = 5324.780897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.263 1.263 13 O -0.364 6.364 14 C 0.453 3.547 15 O -0.546 6.546 16 C -0.107 4.107 17 C -0.080 4.080 18 C -0.173 4.173 19 C -0.163 4.163 20 C -0.132 4.132 21 C -0.075 4.075 22 H 0.037 0.963 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.270 0.730 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 8.028 -12.321 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.187 1.187 13 O -0.281 6.281 14 C 0.298 3.702 15 O -0.437 6.437 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.173 4.173 19 C -0.200 4.200 20 C -0.168 4.168 21 C -0.112 4.112 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.355 7.903 -11.830 16.016 hybrid contribution 0.810 -0.280 0.888 1.234 sum -6.546 7.623 -10.941 14.855 Atomic orbital electron populations 1.21708 0.96253 1.00610 1.00076 1.21862 0.94507 0.98104 1.02300 1.20353 0.94553 0.89322 0.78801 0.97871 1.21337 0.90573 1.40099 1.06771 0.91719 1.25813 1.04280 0.93834 0.94323 1.70020 1.37473 1.38031 1.09765 0.85212 0.77654 0.78036 0.78695 1.19801 1.19949 1.18707 1.86481 1.36366 1.62910 1.42316 1.24298 0.79272 0.75650 0.90982 1.90567 1.56097 1.59420 1.37631 1.22584 0.99727 0.96647 0.93598 1.22389 0.96292 0.91421 1.01622 1.22017 0.95911 0.97120 1.02221 1.22925 1.02794 0.91931 1.02344 1.22944 1.03580 1.00999 0.89296 1.22376 0.94458 0.94167 1.00176 0.94379 0.91895 0.94705 0.93538 0.89616 0.92039 0.84144 0.91082 0.88739 0.87945 0.88046 0.87252 0.87137 0.89055 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.20 16 2 C -0.13 -6.70 5.49 30.59 0.17 -6.53 16 3 C 0.22 12.47 2.25 29.85 0.07 12.54 16 4 H 0.00 0.22 7.16 -2.39 -0.02 0.20 16 5 C -0.55 -31.84 8.89 25.60 0.23 -31.62 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.96 5.30 84.66 0.45 1.41 16 8 N -0.92 -53.10 11.30 21.45 0.24 -52.86 16 9 Si 0.98 43.34 29.54 68.60 2.03 45.36 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 O -0.36 -18.01 9.81 -51.48 -0.50 -18.52 16 14 C 0.45 19.40 5.94 71.23 0.42 19.82 16 15 O -0.55 -26.36 13.05 21.98 0.29 -26.07 16 16 C -0.11 -3.21 4.25 -10.94 -0.05 -3.25 16 17 C -0.08 -2.10 7.66 31.04 0.24 -1.86 16 18 C -0.17 -3.67 3.09 -52.31 -0.16 -3.83 16 19 C -0.16 -2.77 10.53 30.46 0.32 -2.45 16 20 C -0.13 -1.98 10.53 30.46 0.32 -1.66 16 21 C -0.07 -1.92 7.42 30.98 0.23 -1.69 16 22 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 23 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.03 1.66 7.80 -2.39 -0.02 1.64 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.09 4.82 5.96 -2.39 -0.01 4.80 16 27 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 28 H 0.14 3.56 8.14 -2.39 -0.02 3.55 16 29 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 30 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.34 7.44 -2.39 -0.02 2.32 16 Total: -1.00 -66.38 296.83 5.95 -60.42 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.05 Total: 15.98 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 2.85 Total: -24.31 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.24 Total: -52.86 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.22 Total: -44.59 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.38 5.95 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.044 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds