Wall clock time and date at job start Sun Mar 29 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47157 * 120.00251 * 8 6 4 11 11 H 1.48502 * 109.47214 * 239.99759 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.46898 * 110.99888 * 176.04575 * 12 2 1 14 14 C 1.46902 * 110.99573 * 299.99941 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 C 1.38145 * 119.60056 * 94.72507 * 15 14 12 17 17 C 1.38704 * 119.22287 * 179.77053 * 16 15 14 18 18 C 1.38551 * 118.44923 * 0.49717 * 17 16 15 19 19 C 1.38518 * 119.13905 * 359.74536 * 18 17 16 20 20 F 1.35102 * 119.64823 * 179.97438 * 19 18 17 21 21 N 1.31900 * 119.60068 * 275.00057 * 15 14 12 22 22 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 24 24 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 25 25 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 27 27 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 28 28 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 29 29 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 30 30 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 31 31 H 1.08005 * 120.38606 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.77367 * 180.24304 * 17 16 15 33 33 H 1.08000 * 120.42692 * 179.77287 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5485 -0.0264 2.4211 15 6 1.8578 -0.8912 3.6159 16 6 3.0193 -0.6756 4.3320 17 6 3.2938 -1.4731 5.4332 18 6 2.3907 -2.4689 5.7685 19 6 1.2489 -2.6303 5.0011 20 9 0.3617 -3.5984 5.3185 21 7 1.0188 -1.8483 3.9621 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1609 -3.4844 26 1 3.9186 0.2050 1.1592 27 1 3.8207 -1.3118 2.0859 28 1 3.8029 -1.3532 0.3068 29 1 2.0518 0.9345 2.5281 30 1 0.4721 0.1324 2.3563 31 1 3.7041 0.1068 4.0397 32 1 4.1925 -1.3239 6.0132 33 1 2.5745 -3.1107 6.6175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851809743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:41 Heat of formation + Delta-G solvation = 4.550358 kcal Electronic energy + Delta-G solvation = -16727.646708 eV Core-core repulsion = 13896.473942 eV Total energy + Delta-G solvation = -2831.172766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.89490 -40.10547 -36.92493 -33.14280 -32.56428 -31.12616 -29.02184 -27.31791 -24.84296 -23.86723 -23.25141 -21.82054 -19.46316 -17.71697 -16.87735 -16.28548 -16.09177 -15.97775 -15.21887 -14.30468 -14.12280 -14.01043 -13.61130 -13.16916 -12.70001 -12.61165 -12.42705 -11.93658 -11.86239 -11.16799 -11.01523 -10.69925 -10.63774 -10.14467 -10.10674 -9.96668 -9.85306 -9.42022 -8.93079 -8.78890 -8.41810 -7.23096 -6.01685 -4.06014 0.96666 1.18175 3.29982 3.37992 3.42334 3.58657 3.68993 4.41093 4.49142 4.71319 4.93184 5.00635 5.15415 5.31628 5.49626 5.66667 5.79143 5.96001 6.06517 6.09540 6.19189 6.33910 6.67226 6.72905 6.87079 7.08142 7.13612 7.49393 7.68715 7.82460 7.87678 8.18392 8.29733 8.55503 8.99941 9.58892 11.05218 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.038441 B = 0.005606 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.209841 B = 4993.531243 C = 5088.294305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.091 3.909 15 C 0.194 3.806 16 C -0.182 4.182 17 C -0.050 4.050 18 C -0.209 4.209 19 C 0.306 3.694 20 F -0.117 7.117 21 N -0.494 5.494 22 H 0.037 0.963 23 H 0.009 0.991 24 H 0.086 0.914 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -2.080 14.787 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.108 3.892 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.115 4.115 14 C -0.038 4.038 15 C 0.056 3.944 16 C -0.203 4.203 17 C -0.075 4.075 18 C -0.230 4.230 19 C 0.152 3.848 20 F -0.096 7.096 21 N -0.209 5.209 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.621 -2.609 14.150 14.837 hybrid contribution 1.166 0.217 -0.287 1.220 sum 4.787 -2.392 13.863 14.860 Atomic orbital electron populations 1.21866 0.97490 0.99994 0.99874 1.19295 0.92540 0.91946 0.85402 0.98176 1.21171 1.31028 1.12269 0.89631 0.91796 1.24924 0.95196 0.95085 0.99019 1.69899 1.36903 1.23075 1.23346 0.86456 0.78607 0.79580 0.82853 1.19772 1.20991 1.21157 1.62130 1.09323 1.52565 1.01229 1.22295 0.88698 0.99205 1.01299 1.21132 1.02975 0.92195 0.87493 1.21193 0.88489 0.90439 0.94312 1.22094 0.98804 1.02405 0.96959 1.21407 0.98166 0.92602 0.95352 1.21732 0.95407 1.02667 1.03200 1.18216 0.86813 0.87608 0.92173 1.91608 1.67814 1.59090 1.91122 1.66873 1.34218 1.05453 1.14319 0.94420 0.97180 0.89580 0.93014 0.96703 0.94005 0.90371 0.93696 0.88476 0.84158 0.84009 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.76 37.16 0.33 -3.00 16 2 C 0.21 5.37 2.06 -68.86 -0.14 5.23 16 3 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 4 C -0.50 -13.73 7.93 -34.44 -0.27 -14.00 16 5 H 0.06 1.75 6.39 -52.48 -0.34 1.42 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.53 -11.45 4.61 -237.73 -1.10 -12.55 16 13 C 0.03 0.65 8.95 60.06 0.54 1.19 16 14 C 0.09 1.67 5.10 -4.97 -0.03 1.64 16 15 C 0.19 3.20 5.65 -82.59 -0.47 2.73 16 16 C -0.18 -2.32 8.23 -39.44 -0.32 -2.65 16 17 C -0.05 -0.52 10.17 -39.29 -0.40 -0.92 16 18 C -0.21 -2.41 10.09 -39.36 -0.40 -2.81 16 19 C 0.31 4.68 8.41 -17.35 -0.15 4.53 16 20 F -0.12 -1.80 17.29 2.25 0.04 -1.76 16 21 N -0.49 -8.87 10.29 -9.81 -0.10 -8.97 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.01 0.21 6.20 -51.93 -0.32 -0.11 16 24 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 28 H 0.08 1.63 6.23 -51.93 -0.32 1.31 16 29 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 30 H 0.10 1.88 5.83 -51.93 -0.30 1.58 16 31 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 276.83 15.07 4.17 4.17 Total: -1.00 -29.94 276.83 -6.79 -36.74 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.01 Total: -2.72 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.41 Total: -6.52 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.57 Total: -46.21 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.94 -6.79 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.286 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds