Wall clock time and date at job start Sun Mar 29 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47157 * 120.00251 * 8 6 4 11 11 H 1.48502 * 109.47214 * 239.99759 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.46898 * 110.99888 * 176.04575 * 12 2 1 14 14 C 1.46902 * 110.99573 * 299.99941 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 C 1.38145 * 119.60056 * 94.72507 * 15 14 12 17 17 C 1.38704 * 119.22287 * 179.77053 * 16 15 14 18 18 C 1.38551 * 118.44923 * 0.49717 * 17 16 15 19 19 C 1.38518 * 119.13905 * 359.74536 * 18 17 16 20 20 F 1.35102 * 119.64823 * 179.97438 * 19 18 17 21 21 N 1.31900 * 119.60068 * 275.00057 * 15 14 12 22 22 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 24 24 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 25 25 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 27 27 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 28 28 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 29 29 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 30 30 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 31 31 H 1.08005 * 120.38606 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.77367 * 180.24304 * 17 16 15 33 33 H 1.08000 * 120.42692 * 179.77287 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5485 -0.0264 2.4211 15 6 1.8578 -0.8912 3.6159 16 6 3.0193 -0.6756 4.3320 17 6 3.2938 -1.4731 5.4332 18 6 2.3907 -2.4689 5.7685 19 6 1.2489 -2.6303 5.0011 20 9 0.3617 -3.5984 5.3185 21 7 1.0188 -1.8483 3.9621 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1609 -3.4844 26 1 3.9186 0.2050 1.1592 27 1 3.8207 -1.3118 2.0859 28 1 3.8029 -1.3532 0.3068 29 1 2.0518 0.9345 2.5281 30 1 0.4721 0.1324 2.3563 31 1 3.7041 0.1068 4.0397 32 1 4.1925 -1.3239 6.0132 33 1 2.5745 -3.1107 6.6175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851809743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:41 Heat of formation + Delta-G solvation = -15.593444 kcal Electronic energy + Delta-G solvation = -16728.520209 eV Core-core repulsion = 13896.473942 eV Total energy + Delta-G solvation = -2832.046267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.99833 -41.21065 -38.59753 -34.98827 -33.66960 -32.50749 -30.84141 -28.79366 -26.76864 -25.35942 -24.33588 -23.19718 -21.26216 -18.86105 -18.35887 -17.91809 -17.19615 -17.04555 -16.92675 -15.92660 -15.71206 -15.53133 -14.86533 -14.42220 -14.17173 -13.92531 -13.85948 -13.55392 -13.09955 -12.96227 -12.80424 -12.58165 -12.44477 -12.11049 -11.97806 -11.76805 -10.99306 -10.86063 -10.56809 -10.51606 -9.88767 -8.93538 -8.11490 -6.22932 -0.07138 0.22102 1.41085 1.43505 1.54872 2.40660 2.52663 2.62783 3.17068 3.41093 3.54140 3.83917 4.02146 4.10644 4.37945 4.44471 4.59904 4.68971 4.73841 4.78913 4.94598 5.02028 5.03067 5.07628 5.12268 5.26022 5.48036 5.68406 5.72283 5.76652 6.24393 6.37363 6.67478 6.80277 6.90916 7.45938 8.94804 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.038441 B = 0.005606 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.209841 B = 4993.531243 C = 5088.294305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.219 3.781 3 H -0.026 1.026 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.040 3.960 14 C 0.094 3.906 15 C 0.165 3.835 16 C -0.174 4.174 17 C -0.033 4.033 18 C -0.187 4.187 19 C 0.275 3.725 20 F -0.128 7.128 21 N -0.542 5.542 22 H 0.023 0.977 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -2.581 16.570 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 H -0.008 1.008 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.268 5.268 13 C -0.108 4.108 14 C -0.034 4.034 15 C 0.028 3.972 16 C -0.194 4.194 17 C -0.058 4.058 18 C -0.208 4.208 19 C 0.122 3.878 20 F -0.107 7.107 21 N -0.257 5.257 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.181 0.819 32 H 0.210 0.790 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.789 -3.111 15.952 17.253 hybrid contribution 0.502 0.368 -0.722 0.953 sum 6.291 -2.743 15.230 16.705 Atomic orbital electron populations 1.21682 0.97697 0.98896 0.99720 1.19053 0.92365 0.90588 0.86748 1.00811 1.21432 1.31110 1.12223 0.90903 0.92424 1.25694 0.95364 0.95773 1.01844 1.70016 1.37695 1.24188 1.24037 0.85472 0.78075 0.78602 0.79255 1.19353 1.20820 1.20353 1.61988 1.10810 1.52735 1.01291 1.22234 0.87321 0.99585 1.01644 1.21047 1.01762 0.93416 0.87182 1.20900 0.90420 0.91115 0.94799 1.22346 0.97309 1.02875 0.96885 1.21972 0.99051 0.90587 0.94213 1.22170 0.93328 1.02541 1.02762 1.18611 0.88334 0.87961 0.92933 1.91577 1.68484 1.59456 1.91177 1.66609 1.36007 1.06806 1.16323 0.95785 0.95135 0.91884 0.92884 0.96012 0.91170 0.92510 0.92097 0.90559 0.81888 0.78978 0.80341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.25 8.76 71.98 0.63 -5.62 16 2 C 0.22 11.32 2.06 44.17 0.09 11.41 16 3 H -0.03 -1.43 8.14 -2.39 -0.02 -1.45 16 4 C -0.52 -28.89 7.93 25.60 0.20 -28.69 16 5 H 0.06 3.22 6.39 -2.91 -0.02 3.20 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.92 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 N -0.54 -23.80 4.61 -906.04 -4.18 -27.98 16 13 C 0.04 1.53 8.95 127.69 1.14 2.67 16 14 C 0.09 3.46 5.10 85.56 0.44 3.90 16 15 C 0.17 5.25 5.65 42.53 0.24 5.49 16 16 C -0.17 -3.81 8.23 22.36 0.18 -3.63 16 17 C -0.03 -0.52 10.17 22.46 0.23 -0.29 16 18 C -0.19 -3.58 10.09 22.41 0.23 -3.35 16 19 C 0.28 8.06 8.41 84.73 0.71 8.78 16 20 F -0.13 -3.87 17.29 44.97 0.78 -3.09 16 21 N -0.54 -19.36 10.29 -184.95 -1.90 -21.26 16 22 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.03 1.38 6.20 -2.39 -0.01 1.37 16 24 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 2.22 6.15 -2.39 -0.01 2.21 16 28 H 0.06 2.37 6.23 -2.39 -0.01 2.36 16 29 H 0.06 1.99 8.02 -2.39 -0.02 1.98 16 30 H 0.08 3.05 5.83 -2.39 -0.01 3.03 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -67.39 276.83 2.62 -64.78 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.11 Total: 2.57 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.54 Total: -8.22 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -5.84 Total: -102.17 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.39 2.62 -64.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.182 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds