Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 2 16 16 C 1.38152 * 119.60340 * 94.72264 * 15 14 12 17 17 C 1.38702 * 119.22206 * 179.77232 * 16 15 14 18 18 C 1.38550 * 118.45048 * 0.49867 * 17 16 15 19 19 C 1.38511 * 119.14397 * 359.74903 * 18 17 16 20 20 F 1.35095 * 119.65415 * 179.97438 * 19 18 17 21 21 N 1.31908 * 119.60484 * 275.00247 * 15 14 12 22 22 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 23 23 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 24 24 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 27 27 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 28 28 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 29 29 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 30 30 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 31 31 H 1.08002 * 120.38398 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.77400 * 180.24321 * 17 16 15 33 33 H 1.08004 * 120.42743 * 179.76734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5794 16 6 1.8137 -1.4052 -4.4029 17 6 2.4867 -1.9615 -5.4807 18 6 3.8110 -1.6095 -5.6849 19 6 4.4133 -0.7157 -4.8148 20 9 5.7044 -0.3658 -5.0040 21 7 3.7390 -0.2024 -3.8021 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1612 3.4844 26 1 1.8663 -2.5522 -2.1648 27 1 0.3555 -1.9520 -1.4399 28 1 1.6466 -2.5988 -0.3991 29 1 0.6814 0.1052 -2.6087 30 1 2.1025 1.1188 -2.2603 31 1 0.7819 -1.6607 -4.2121 32 1 1.9911 -2.6560 -6.1428 33 1 4.3666 -2.0264 -6.5120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851809744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = 3.555763 kcal Electronic energy + Delta-G solvation = -16729.678979 eV Core-core repulsion = 13898.463084 eV Total energy + Delta-G solvation = -2831.215895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.89577 -40.10928 -37.11175 -33.13758 -32.54874 -31.19126 -28.54204 -27.06248 -25.23107 -24.26104 -23.29275 -21.83894 -19.30849 -17.69082 -16.87947 -16.20332 -16.04104 -15.99297 -15.22030 -14.43228 -14.17765 -13.92017 -13.35842 -13.21828 -12.91502 -12.65178 -12.48432 -12.00068 -11.49369 -11.13309 -11.07038 -10.80085 -10.69791 -10.50624 -10.07517 -10.00840 -9.84476 -9.44753 -8.94048 -8.80692 -8.37546 -7.20906 -6.00362 -4.03694 0.96569 1.18060 3.32992 3.39133 3.42368 3.58546 3.68980 4.42691 4.48971 4.71262 4.93126 5.00542 5.18385 5.32214 5.49175 5.66439 5.78931 5.96218 6.06479 6.09320 6.19693 6.31561 6.61793 6.69076 6.77574 6.84718 7.07636 7.41360 7.67825 7.82455 7.87426 8.11021 8.34636 8.55639 9.01709 9.61090 11.06839 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.005728 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.531994 B = 4887.371698 C = 5179.471558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.524 5.524 13 C 0.031 3.969 14 C 0.096 3.904 15 C 0.194 3.806 16 C -0.182 4.182 17 C -0.050 4.050 18 C -0.209 4.209 19 C 0.306 3.694 20 F -0.117 7.117 21 N -0.494 5.494 22 H 0.089 0.911 23 H 0.007 0.993 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -4.866 -15.100 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.248 5.248 13 C -0.118 4.118 14 C -0.033 4.033 15 C 0.055 3.945 16 C -0.202 4.202 17 C -0.075 4.075 18 C -0.230 4.230 19 C 0.152 3.848 20 F -0.096 7.096 21 N -0.209 5.209 22 H 0.108 0.892 23 H 0.026 0.974 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.989 -4.201 -14.352 14.987 hybrid contribution -0.658 -0.859 0.188 1.098 sum 0.331 -5.060 -14.164 15.045 Atomic orbital electron populations 1.22425 1.00670 0.99496 1.00626 1.19362 0.89808 0.94661 0.85579 0.94049 1.21081 1.30476 1.12525 0.89511 0.91956 1.24915 0.95222 0.95168 0.98975 1.69877 1.37063 1.23093 1.23420 0.86506 0.78539 0.79960 0.82434 1.20668 1.21385 1.19990 1.62339 1.58958 1.02273 1.01258 1.22317 0.96121 0.91933 1.01425 1.21039 0.95699 0.98455 0.88108 1.21205 0.87516 0.91491 0.94276 1.22084 1.02328 0.99312 0.96489 1.21406 0.93050 0.96922 0.96150 1.21732 0.97062 1.01759 1.02450 1.18212 0.80308 0.93834 0.92436 1.91606 1.33244 1.90854 1.93920 1.66879 1.09559 1.26550 1.17921 0.89193 0.97403 0.94885 0.92996 0.94100 0.96193 0.90586 0.93289 0.89276 0.84175 0.84012 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.22 37.16 0.31 -3.73 16 2 C 0.21 5.27 2.31 -68.86 -0.16 5.11 16 3 H 0.04 1.14 7.93 -51.93 -0.41 0.73 16 4 C -0.50 -13.60 7.91 -34.44 -0.27 -13.88 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.52 -11.28 4.69 -237.72 -1.12 -12.39 16 13 C 0.03 0.58 8.33 60.07 0.50 1.08 16 14 C 0.10 1.74 4.86 -4.97 -0.02 1.72 16 15 C 0.19 3.17 5.65 -82.59 -0.47 2.71 16 16 C -0.18 -2.31 8.33 -39.44 -0.33 -2.63 16 17 C -0.05 -0.52 10.17 -39.30 -0.40 -0.92 16 18 C -0.21 -2.41 10.09 -39.37 -0.40 -2.80 16 19 C 0.31 4.68 8.41 -17.35 -0.15 4.54 16 20 F -0.12 -1.80 17.29 2.25 0.04 -1.76 16 21 N -0.49 -8.87 10.29 -9.81 -0.10 -8.97 16 22 H 0.09 2.34 6.07 -51.92 -0.32 2.03 16 23 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 24 H 0.03 0.74 6.42 -51.93 -0.33 0.40 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.04 0.69 6.39 -51.93 -0.33 0.36 16 27 H 0.02 0.36 6.46 -51.93 -0.34 0.02 16 28 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 29 H 0.05 0.81 6.96 -51.93 -0.36 0.45 16 30 H 0.09 1.70 7.93 -51.93 -0.41 1.29 16 31 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 275.45 15.07 4.15 4.15 Total: -1.00 -29.73 275.45 -6.89 -36.62 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.99 Total: -2.05 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.48 Total: -7.31 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.59 Total: -46.07 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.73 -6.89 -36.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.174 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds