Wall clock time and date at job start Sun Mar 29 2020 22:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.50696 * 109.47351 * 169.99890 * 14 12 2 16 16 C 1.38152 * 119.60340 * 94.72264 * 15 14 12 17 17 C 1.38702 * 119.22206 * 179.77232 * 16 15 14 18 18 C 1.38550 * 118.45048 * 0.49867 * 17 16 15 19 19 C 1.38511 * 119.14397 * 359.74903 * 18 17 16 20 20 F 1.35095 * 119.65415 * 179.97438 * 19 18 17 21 21 N 1.31908 * 119.60484 * 275.00247 * 15 14 12 22 22 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 23 23 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 24 24 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 27 27 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 28 28 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 29 29 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 30 30 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 31 31 H 1.08002 * 120.38398 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.77400 * 180.24321 * 17 16 15 33 33 H 1.08004 * 120.42743 * 179.76734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4773 -0.5163 -3.5794 16 6 1.8137 -1.4052 -4.4029 17 6 2.4867 -1.9615 -5.4807 18 6 3.8110 -1.6095 -5.6849 19 6 4.4133 -0.7157 -4.8148 20 9 5.7044 -0.3658 -5.0040 21 7 3.7390 -0.2024 -3.8021 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.7089 1.1612 3.4844 26 1 1.8663 -2.5522 -2.1648 27 1 0.3555 -1.9520 -1.4399 28 1 1.6466 -2.5988 -0.3991 29 1 0.6814 0.1052 -2.6087 30 1 2.1025 1.1188 -2.2603 31 1 0.7819 -1.6607 -4.2121 32 1 1.9911 -2.6560 -6.1428 33 1 4.3666 -2.0264 -6.5120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851809744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:44 Heat of formation + Delta-G solvation = -16.598623 kcal Electronic energy + Delta-G solvation = -16730.552939 eV Core-core repulsion = 13898.463084 eV Total energy + Delta-G solvation = -2832.089855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.00236 -41.21405 -38.76686 -34.95131 -33.68022 -32.56989 -30.26725 -28.46163 -27.25707 -25.74157 -24.34185 -23.17626 -21.08562 -18.80824 -18.31331 -17.82293 -17.24086 -17.04344 -16.90077 -16.14485 -15.60789 -15.36037 -14.76274 -14.46869 -14.31803 -13.95886 -13.85494 -13.45980 -13.03829 -12.86765 -12.80668 -12.58081 -12.48323 -12.26017 -12.03582 -11.77796 -11.00859 -10.89555 -10.55443 -10.48641 -9.89781 -8.85195 -8.10315 -6.20899 -0.06866 0.22339 1.42095 1.43660 1.53331 2.41509 2.52947 2.63250 3.18752 3.42337 3.56206 3.84905 4.02465 4.11013 4.37693 4.46315 4.60302 4.70240 4.75191 4.80731 4.87780 4.91443 5.02982 5.12680 5.14278 5.18331 5.53583 5.68925 5.71382 5.80287 6.21304 6.48309 6.68276 6.80677 6.91503 7.47980 8.95629 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.005728 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.531994 B = 4887.371698 C = 5179.471558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.002 0.998 4 C -0.514 4.514 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.544 5.544 13 C 0.039 3.961 14 C 0.101 3.899 15 C 0.164 3.836 16 C -0.172 4.172 17 C -0.033 4.033 18 C -0.187 4.187 19 C 0.274 3.726 20 F -0.128 7.128 21 N -0.544 5.544 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.165 0.835 32 H 0.194 0.806 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -7.086 -17.094 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.020 0.980 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.268 5.268 13 C -0.109 4.109 14 C -0.028 4.028 15 C 0.027 3.973 16 C -0.192 4.192 17 C -0.058 4.058 18 C -0.208 4.208 19 C 0.121 3.879 20 F -0.107 7.107 21 N -0.260 5.260 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.183 0.817 32 H 0.211 0.789 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.249 -6.428 -16.362 17.581 hybrid contribution -0.395 -0.163 0.694 0.815 sum -0.147 -6.591 -15.668 16.998 Atomic orbital electron populations 1.22190 0.99431 0.99732 1.00300 1.19080 0.90617 0.92614 0.86743 0.98046 1.21341 1.30519 1.12416 0.90968 0.92951 1.25659 0.95414 0.95854 1.01713 1.70002 1.37823 1.24124 1.24012 0.85554 0.77889 0.79070 0.79076 1.20709 1.20631 1.19319 1.62142 1.59796 1.03423 1.01462 1.22245 0.96975 0.90398 1.01292 1.20945 0.97060 0.97004 0.87767 1.20937 0.87539 0.93864 0.94982 1.22346 1.03287 0.97564 0.96045 1.21980 0.92254 0.96211 0.95392 1.22170 0.97630 0.99298 1.01714 1.18615 0.80257 0.95636 0.93401 1.91573 1.33946 1.91222 1.94003 1.66615 1.10882 1.28461 1.20058 0.92073 0.95065 0.94145 0.92940 0.91615 0.94815 0.92897 0.91426 0.91825 0.81728 0.78930 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.38 8.22 71.98 0.59 -6.79 16 2 C 0.22 11.09 2.31 44.17 0.10 11.20 16 3 H 0.00 0.09 7.93 -2.39 -0.02 0.07 16 4 C -0.51 -28.81 7.91 25.60 0.20 -28.61 16 5 H 0.05 2.97 7.12 -2.91 -0.02 2.95 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.54 -23.67 4.69 -906.02 -4.25 -27.92 16 13 C 0.04 1.44 8.33 127.69 1.06 2.50 16 14 C 0.10 3.68 4.86 85.55 0.42 4.10 16 15 C 0.16 5.22 5.65 42.53 0.24 5.46 16 16 C -0.17 -3.73 8.33 22.36 0.19 -3.55 16 17 C -0.03 -0.52 10.17 22.46 0.23 -0.29 16 18 C -0.19 -3.59 10.09 22.41 0.23 -3.37 16 19 C 0.27 8.12 8.41 84.72 0.71 8.83 16 20 F -0.13 -3.93 17.29 44.97 0.78 -3.15 16 21 N -0.54 -19.65 10.29 -184.96 -1.90 -21.55 16 22 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 23 H 0.03 1.27 6.91 -2.39 -0.02 1.25 16 24 H 0.04 1.79 6.42 -2.39 -0.02 1.77 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.07 2.07 6.39 -2.39 -0.02 2.06 16 27 H 0.03 1.14 6.46 -2.39 -0.02 1.12 16 28 H 0.05 2.18 6.76 -2.38 -0.02 2.16 16 29 H 0.07 2.15 6.96 -2.39 -0.02 2.14 16 30 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 31 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -67.69 275.45 2.42 -65.26 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.11 Total: 3.26 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.42 Total: -9.39 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -5.91 Total: -102.44 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.69 2.42 -65.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851809744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.666 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds