Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 H 1.08997 * 109.46975 * 177.96115 * 3 2 1 5 5 C 1.50701 * 109.47180 * 57.96153 * 3 2 1 6 6 H 1.07995 * 120.00076 * 240.00179 * 5 3 2 7 7 C 1.37883 * 120.00146 * 59.99974 * 5 3 2 8 8 N 1.31513 * 119.99812 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47268 * 59.99954 * 9 7 5 11 11 H 1.48496 * 109.46968 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47209 * 299.99796 * 9 7 5 13 13 N 1.46898 * 109.47217 * 297.95937 * 3 2 1 14 14 C 1.46895 * 111.00028 * 273.75158 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89990 * 14 13 3 16 16 C 1.38142 * 119.60432 * 94.72311 * 15 14 13 17 17 C 1.38701 * 119.22349 * 179.77322 * 16 15 14 18 18 C 1.38553 * 118.44969 * 0.49312 * 17 16 15 19 19 C 1.38515 * 119.14054 * 359.74647 * 18 17 16 20 20 F 1.35096 * 119.64989 * 179.97438 * 19 18 17 21 21 N 1.31904 * 119.59829 * 274.99617 * 15 14 13 22 22 H 1.09004 * 109.47055 * 294.45115 * 1 2 3 23 23 H 1.08999 * 109.46840 * 174.45106 * 1 2 3 24 24 H 1.09005 * 109.46699 * 54.44621 * 1 2 3 25 25 H 1.09003 * 109.47222 * 119.99768 * 2 1 3 26 26 H 1.09000 * 109.47386 * 239.99541 * 2 1 3 27 27 H 0.97002 * 120.00022 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99953 * 149.78993 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.89261 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.89776 * 14 13 3 31 31 H 1.08006 * 120.38630 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.77966 * 180.24439 * 17 16 15 33 33 H 1.07998 * 120.42997 * 179.77551 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0366 5 6 1.4969 2.1674 1.2044 6 1 0.8799 3.0441 1.0742 7 6 1.7877 1.7113 2.4727 8 7 2.5395 0.6439 2.6313 9 14 1.1138 2.6094 3.9656 10 1 -0.3703 2.6085 3.9156 11 1 1.5683 1.9243 5.2022 12 1 1.6083 4.0096 3.9658 13 7 1.5911 2.1206 -1.2233 14 6 2.5284 1.8856 -2.3297 15 6 1.9739 2.4890 -3.5945 16 6 2.3558 3.7631 -3.9673 17 6 1.8443 4.3089 -5.1354 18 6 0.9556 3.5533 -5.8830 19 6 0.6140 2.2845 -5.4447 20 9 -0.2520 1.5391 -6.1654 21 7 1.1255 1.7961 -4.3294 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0994 24 1 -0.3633 0.5976 -0.8361 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 2.7438 0.3228 3.5236 28 1 1.4617 3.1083 -1.0625 29 1 3.4880 2.3475 -2.0973 30 1 2.6653 0.8132 -2.4683 31 1 3.0472 4.3264 -3.3581 32 1 2.1290 5.3012 -5.4527 33 1 0.5350 3.9483 -6.7959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852157464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = -11.321090 kcal Electronic energy + Delta-G solvation = -16524.394878 eV Core-core repulsion = 13692.533874 eV Total energy + Delta-G solvation = -2831.861004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.91725 -40.04064 -36.31430 -33.29185 -32.46171 -31.26499 -29.89497 -26.83034 -24.82424 -23.39770 -23.10758 -21.87049 -19.02048 -17.72786 -17.12724 -16.21815 -16.12925 -15.97148 -14.94773 -14.37428 -13.91330 -13.83204 -13.69345 -13.17518 -12.80101 -12.66937 -12.22761 -12.05621 -11.73894 -11.32439 -10.91195 -10.80365 -10.38042 -10.12926 -9.95787 -9.79030 -9.44925 -9.31910 -8.90108 -8.75259 -8.47742 -7.29990 -6.02707 -4.08343 0.95056 1.16298 3.30204 3.35397 3.37851 3.57717 3.67322 4.39318 4.47638 4.70955 4.91632 5.00003 5.28193 5.45044 5.51219 5.68943 5.79953 6.00149 6.07195 6.21812 6.57828 6.66949 6.77706 6.90557 7.27094 7.32139 7.51409 7.75258 7.78540 7.83654 7.86281 8.23848 8.34606 8.61392 8.99294 9.56212 11.03241 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.005518 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.955297 B = 5073.213488 C = 5378.011559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.103 3.897 15 C 0.189 3.811 16 C -0.182 4.182 17 C -0.049 4.049 18 C -0.208 4.208 19 C 0.305 3.695 20 F -0.117 7.117 21 N -0.494 5.494 22 H 0.050 0.950 23 H 0.012 0.988 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.012 0.988 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 6.321 -13.476 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.307 5.307 14 C -0.027 4.027 15 C 0.050 3.950 16 C -0.203 4.203 17 C -0.074 4.074 18 C -0.230 4.230 19 C 0.151 3.849 20 F -0.097 7.097 21 N -0.208 5.208 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.274 4.810 -13.264 14.112 hybrid contribution 0.354 1.639 0.647 1.798 sum 0.080 6.449 -12.617 14.170 Atomic orbital electron populations 1.21428 0.97458 0.97232 1.01478 1.21422 0.95216 0.98009 0.99369 1.19153 0.93386 0.91758 0.84594 0.97952 1.21117 1.31859 1.12055 0.90280 0.92351 1.24868 0.95038 0.95000 0.98815 1.69878 1.37217 1.23003 1.22538 0.86628 0.79478 0.79671 0.82027 1.20210 1.21331 1.20402 1.60639 1.46882 1.16232 1.06942 1.20899 0.93371 1.01252 0.87187 1.21273 0.89395 0.90091 0.94193 1.22099 1.03197 0.96734 0.98248 1.21420 0.93414 0.99467 0.93134 1.21744 1.03088 0.94500 1.03641 1.18224 0.90014 0.87584 0.89040 1.91606 1.66176 1.77055 1.74814 1.66888 1.10618 1.38785 1.04559 0.93088 0.96852 0.93358 0.89651 0.96955 0.92862 0.85190 0.93892 0.89552 0.84008 0.83987 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.46 37.16 0.35 -2.43 16 2 C -0.10 -2.50 5.58 -26.73 -0.15 -2.64 16 3 C 0.22 5.32 2.30 -68.86 -0.16 5.17 16 4 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 16 5 C -0.51 -13.56 7.34 -34.44 -0.25 -13.81 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.79 11.34 55.43 0.63 -24.16 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.03 5.50 -109.22 -0.60 -14.63 16 14 C 0.10 1.82 5.76 -4.98 -0.03 1.79 16 15 C 0.19 3.00 6.34 -82.59 -0.52 2.48 16 16 C -0.18 -2.25 9.72 -39.45 -0.38 -2.63 16 17 C -0.05 -0.50 10.17 -39.29 -0.40 -0.90 16 18 C -0.21 -2.36 10.09 -39.36 -0.40 -2.75 16 19 C 0.31 4.57 8.41 -17.35 -0.15 4.43 16 20 F -0.12 -1.77 17.29 2.25 0.04 -1.73 16 21 N -0.49 -8.62 10.29 -9.81 -0.10 -8.72 16 22 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.05 1.12 7.50 -51.93 -0.39 0.73 16 25 H 0.09 2.30 6.13 -51.93 -0.32 1.98 16 26 H 0.01 0.28 7.43 -51.93 -0.39 -0.11 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.33 6.64 8.24 -39.29 -0.32 6.31 16 29 H 0.04 0.70 8.04 -51.93 -0.42 0.28 16 30 H 0.09 1.64 7.39 -51.93 -0.38 1.25 16 31 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 283.90 15.07 4.28 4.28 Total: -1.00 -28.98 283.90 -7.19 -36.17 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.23 Total: 2.56 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.18 Total: -9.66 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.07 Total: -47.51 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.98 -7.19 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852157464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.847 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds