Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 H 1.08997 * 109.46975 * 177.96115 * 3 2 1 5 5 C 1.50701 * 109.47180 * 57.96153 * 3 2 1 6 6 H 1.07995 * 120.00076 * 240.00179 * 5 3 2 7 7 C 1.37883 * 120.00146 * 59.99974 * 5 3 2 8 8 N 1.31513 * 119.99812 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47268 * 59.99954 * 9 7 5 11 11 H 1.48496 * 109.46968 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47209 * 299.99796 * 9 7 5 13 13 N 1.46898 * 109.47217 * 297.95937 * 3 2 1 14 14 C 1.46895 * 111.00028 * 273.75158 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.89990 * 14 13 3 16 16 C 1.38142 * 119.60432 * 94.72311 * 15 14 13 17 17 C 1.38701 * 119.22349 * 179.77322 * 16 15 14 18 18 C 1.38553 * 118.44969 * 0.49312 * 17 16 15 19 19 C 1.38515 * 119.14054 * 359.74647 * 18 17 16 20 20 F 1.35096 * 119.64989 * 179.97438 * 19 18 17 21 21 N 1.31904 * 119.59829 * 274.99617 * 15 14 13 22 22 H 1.09004 * 109.47055 * 294.45115 * 1 2 3 23 23 H 1.08999 * 109.46840 * 174.45106 * 1 2 3 24 24 H 1.09005 * 109.46699 * 54.44621 * 1 2 3 25 25 H 1.09003 * 109.47222 * 119.99768 * 2 1 3 26 26 H 1.09000 * 109.47386 * 239.99541 * 2 1 3 27 27 H 0.97002 * 120.00022 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99953 * 149.78993 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.89261 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.89776 * 14 13 3 31 31 H 1.08006 * 120.38630 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.77966 * 180.24439 * 17 16 15 33 33 H 1.07998 * 120.42997 * 179.77551 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0366 5 6 1.4969 2.1674 1.2044 6 1 0.8799 3.0441 1.0742 7 6 1.7877 1.7113 2.4727 8 7 2.5395 0.6439 2.6313 9 14 1.1138 2.6094 3.9656 10 1 -0.3703 2.6085 3.9156 11 1 1.5683 1.9243 5.2022 12 1 1.6083 4.0096 3.9658 13 7 1.5911 2.1206 -1.2233 14 6 2.5284 1.8856 -2.3297 15 6 1.9739 2.4890 -3.5945 16 6 2.3558 3.7631 -3.9673 17 6 1.8443 4.3089 -5.1354 18 6 0.9556 3.5533 -5.8830 19 6 0.6140 2.2845 -5.4447 20 9 -0.2520 1.5391 -6.1654 21 7 1.1255 1.7961 -4.3294 22 1 -0.3633 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0994 24 1 -0.3633 0.5976 -0.8361 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 2.7438 0.3228 3.5236 28 1 1.4617 3.1083 -1.0625 29 1 3.4880 2.3475 -2.0973 30 1 2.6653 0.8132 -2.4683 31 1 3.0472 4.3264 -3.3581 32 1 2.1290 5.3012 -5.4527 33 1 0.5350 3.9483 -6.7959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852157464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = -30.051974 kcal Electronic energy + Delta-G solvation = -16525.207110 eV Core-core repulsion = 13692.533874 eV Total energy + Delta-G solvation = -2832.673236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00055 -41.10135 -38.08555 -34.90563 -33.60462 -32.98362 -31.38670 -28.56512 -26.40164 -25.03699 -24.39453 -23.08917 -20.95227 -18.85613 -18.57166 -17.75535 -17.10033 -17.03865 -16.84386 -15.91437 -15.54048 -15.34698 -14.92174 -14.57334 -14.10179 -13.94376 -13.89950 -13.61077 -13.19019 -12.93246 -12.74952 -12.57374 -12.39805 -11.96248 -11.68376 -11.34583 -10.96191 -10.80205 -10.57105 -10.50731 -9.90395 -9.01050 -8.07831 -6.19914 -0.06446 0.21978 1.44519 1.46504 1.53245 2.43104 2.53950 2.63571 3.21427 3.45383 3.68747 3.97371 4.03968 4.11856 4.42293 4.55008 4.61591 4.77805 4.78808 4.84699 4.93736 5.02831 5.13371 5.29461 5.39173 5.54455 5.69293 5.72732 5.78470 5.87424 6.27026 6.47078 6.73974 6.81924 7.03423 7.48553 8.97374 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036691 B = 0.005518 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.955297 B = 5073.213488 C = 5378.011559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.225 3.775 4 H -0.025 1.025 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.677 5.677 14 C 0.108 3.892 15 C 0.161 3.839 16 C -0.173 4.173 17 C -0.034 4.034 18 C -0.187 4.187 19 C 0.275 3.725 20 F -0.128 7.128 21 N -0.540 5.540 22 H 0.033 0.967 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.261 0.739 28 H 0.335 0.665 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 8.769 -14.648 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.137 4.137 3 C 0.117 3.883 4 H -0.008 1.008 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.308 5.308 14 C -0.022 4.022 15 C 0.023 3.977 16 C -0.193 4.193 17 C -0.059 4.059 18 C -0.208 4.208 19 C 0.121 3.879 20 F -0.107 7.107 21 N -0.255 5.255 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.182 0.818 32 H 0.209 0.791 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.514 7.269 -14.455 16.188 hybrid contribution 0.451 0.897 0.906 1.352 sum -0.064 8.167 -13.549 15.820 Atomic orbital electron populations 1.21273 0.96423 0.98175 1.00361 1.21321 0.96006 0.98116 0.98246 1.18906 0.91542 0.91909 0.85935 1.00767 1.21384 1.31617 1.12098 0.91160 0.92341 1.25605 0.95301 0.95674 1.01473 1.70012 1.38303 1.24260 1.22955 0.85665 0.78707 0.78868 0.78702 1.20051 1.21273 1.19411 1.60485 1.47933 1.16236 1.06167 1.20790 0.93611 1.00351 0.87438 1.20969 0.91043 0.91803 0.93856 1.22360 1.02756 0.95095 0.99135 1.21973 0.91580 1.00934 0.91421 1.22172 1.01820 0.92499 1.04357 1.18606 0.90996 0.89159 0.89136 1.91576 1.66606 1.77618 1.74880 1.66626 1.11966 1.40731 1.06213 0.94775 0.95071 0.93459 0.92198 0.96535 0.92994 0.84697 0.92436 0.91828 0.81754 0.79104 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.96 9.46 71.98 0.68 -4.28 16 2 C -0.10 -4.95 5.58 30.60 0.17 -4.78 16 3 C 0.23 11.24 2.30 44.17 0.10 11.34 16 4 H -0.03 -1.37 7.84 -2.39 -0.02 -1.39 16 5 C -0.52 -27.84 7.34 25.60 0.19 -27.65 16 6 H 0.06 3.04 7.60 -2.91 -0.02 3.02 16 7 C 0.02 1.02 5.30 84.66 0.45 1.47 16 8 N -0.92 -52.05 11.34 21.45 0.24 -51.81 16 9 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.68 -28.40 5.50 -499.47 -2.75 -31.14 16 14 C 0.11 3.87 5.76 85.56 0.49 4.36 16 15 C 0.16 4.99 6.34 42.53 0.27 5.26 16 16 C -0.17 -3.75 9.72 22.36 0.22 -3.53 16 17 C -0.03 -0.53 10.17 22.46 0.23 -0.31 16 18 C -0.19 -3.56 10.09 22.41 0.23 -3.33 16 19 C 0.27 7.93 8.41 84.72 0.71 8.64 16 20 F -0.13 -3.80 17.29 44.97 0.78 -3.02 16 21 N -0.54 -18.85 10.29 -184.95 -1.90 -20.75 16 22 H 0.03 1.69 7.37 -2.39 -0.02 1.67 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 2.21 7.50 -2.38 -0.02 2.19 16 25 H 0.06 3.33 6.13 -2.39 -0.01 3.32 16 26 H 0.02 0.78 7.43 -2.39 -0.02 0.76 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.34 13.38 8.24 -89.70 -0.74 12.64 16 29 H 0.06 1.86 8.04 -2.38 -0.02 1.84 16 30 H 0.06 2.52 7.39 -2.39 -0.02 2.50 16 31 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -64.39 283.90 2.51 -61.88 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.38 Total: 12.79 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.74 Total: -12.80 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.40 Total: -103.70 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.39 2.51 -61.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852157464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.824 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds