Wall clock time and date at job start Sun Mar 29 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09009 * 109.47034 * 179.82706 * 3 2 1 5 5 C 1.50702 * 109.47046 * 299.82361 * 3 2 1 6 6 H 1.08004 * 119.99975 * 120.00430 * 5 3 2 7 7 C 1.37875 * 120.00596 * 299.99928 * 5 3 2 8 8 N 1.31519 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00411 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47157 * 120.00124 * 9 7 5 12 12 H 1.48499 * 109.47428 * 240.00521 * 9 7 5 13 13 N 1.46900 * 109.47332 * 59.82660 * 3 2 1 14 14 C 1.46903 * 110.99574 * 85.92957 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.55881 * 14 13 3 16 16 C 1.38136 * 119.60506 * 94.72489 * 15 14 13 17 17 C 1.38710 * 119.22386 * 179.77051 * 16 15 14 18 18 C 1.38543 * 118.44897 * 0.49576 * 17 16 15 19 19 C 1.38519 * 119.14166 * 359.74774 * 18 17 16 20 20 F 1.35102 * 119.65104 * 179.97438 * 19 18 17 21 21 N 1.31911 * 119.59924 * 274.99408 * 15 14 13 22 22 H 1.09009 * 109.47291 * 55.59015 * 1 2 3 23 23 H 1.08997 * 109.47094 * 295.59601 * 1 2 3 24 24 H 1.09002 * 109.46969 * 175.58861 * 1 2 3 25 25 H 1.08994 * 109.47090 * 119.99713 * 2 1 3 26 26 H 1.09008 * 109.47542 * 240.00111 * 2 1 3 27 27 H 0.96995 * 120.00248 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99999 * 209.87775 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.55046 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.55733 * 14 13 3 31 31 H 1.08007 * 120.39000 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.77368 * 180.23798 * 17 16 15 33 33 H 1.08005 * 120.42793 * 179.77658 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1516 -1.2327 6 1 0.9200 3.0299 -1.1363 7 6 1.8778 1.6794 -2.4835 8 7 2.6339 0.6097 -2.6010 9 14 1.2589 2.5579 -4.0113 10 1 0.4328 3.7252 -3.6107 11 1 2.4159 3.0242 -4.8170 12 1 0.4365 1.6234 -4.8209 13 7 1.5468 2.1362 1.1973 14 6 2.4393 1.9095 2.3420 15 6 1.9630 2.7216 3.5187 16 6 1.1360 2.1395 4.4597 17 6 0.7062 2.8929 5.5422 18 6 1.1177 4.2127 5.6327 19 6 1.9434 4.7309 4.6486 20 9 2.3504 6.0168 4.7264 21 7 2.3365 3.9814 3.6349 22 1 -0.3634 0.5808 -0.8479 23 1 -0.3633 0.4440 0.9268 24 1 -0.3633 -1.0246 -0.0790 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.8704 0.2772 -3.4809 28 1 1.4287 3.1226 1.0208 29 1 2.4323 0.8515 2.6041 30 1 3.4526 2.2118 2.0782 31 1 0.8303 1.1089 4.3556 32 1 0.0624 2.4620 6.2946 33 1 0.7992 4.8295 6.4602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852157495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:31 Heat of formation + Delta-G solvation = -12.801902 kcal Electronic energy + Delta-G solvation = -16500.970456 eV Core-core repulsion = 13669.045239 eV Total energy + Delta-G solvation = -2831.925217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.94650 -40.06501 -36.31224 -33.31897 -32.43889 -31.26821 -29.95130 -26.84263 -24.82031 -23.41966 -23.11169 -21.88747 -19.05100 -17.83238 -16.97386 -16.29645 -16.10288 -16.00259 -14.93394 -14.30446 -14.22943 -13.79006 -13.48262 -13.21897 -12.85622 -12.62546 -12.17372 -12.16284 -11.70693 -11.40901 -10.94721 -10.76295 -10.41304 -10.15827 -9.96236 -9.83717 -9.53283 -9.38200 -8.89952 -8.74739 -8.47172 -7.32018 -6.02556 -4.07709 0.95023 1.14089 3.29277 3.37466 3.41728 3.55748 3.64054 4.40438 4.46511 4.72858 4.91157 5.02832 5.28647 5.43612 5.54706 5.70961 5.80248 6.00296 6.14827 6.22920 6.51707 6.64114 6.67323 6.83282 7.20028 7.25529 7.46195 7.72005 7.76829 7.79095 7.82331 8.23091 8.33595 8.61140 9.00218 9.57039 11.03489 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.005744 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.369344 B = 4873.741295 C = 5396.852651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.004 0.996 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.104 3.896 15 C 0.183 3.817 16 C -0.165 4.165 17 C -0.050 4.050 18 C -0.206 4.206 19 C 0.305 3.695 20 F -0.118 7.118 21 N -0.510 5.510 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.336 0.664 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 2.221 14.779 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.022 0.978 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.026 4.026 15 C 0.046 3.954 16 C -0.186 4.186 17 C -0.076 4.076 18 C -0.228 4.228 19 C 0.151 3.849 20 F -0.097 7.097 21 N -0.225 5.225 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.787 2.011 14.175 14.585 hybrid contribution 0.017 0.969 -0.463 1.075 sum -2.771 2.981 13.711 14.302 Atomic orbital electron populations 1.21454 0.97495 0.97445 1.01346 1.21448 0.95047 0.98113 0.99568 1.19203 0.93213 0.91461 0.85331 0.97844 1.21205 1.31614 1.11946 0.90244 0.92237 1.24871 0.95017 0.95006 0.98918 1.69887 1.36714 1.22729 1.23437 0.86511 0.78598 0.79701 0.83046 1.19778 1.21112 1.20982 1.60887 1.47653 1.16584 1.05774 1.20951 0.95656 0.97319 0.88709 1.21284 0.91198 0.87856 0.95109 1.22059 0.99125 1.02460 0.94919 1.21468 0.96435 0.92552 0.97153 1.21737 1.02199 0.97741 1.01117 1.18157 0.94209 0.80279 0.92278 1.91608 1.89000 1.33519 1.95562 1.66856 1.25482 1.07463 1.22747 0.92481 0.94013 0.96728 0.97100 0.89386 0.92986 0.84657 0.89690 0.93782 0.83687 0.83914 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.52 37.15 0.35 -2.26 16 2 C -0.10 -2.43 5.59 -26.74 -0.15 -2.58 16 3 C 0.22 5.27 2.30 -68.86 -0.16 5.11 16 4 H 0.00 0.11 7.71 -51.92 -0.40 -0.29 16 5 C -0.51 -13.70 7.26 -34.44 -0.25 -13.95 16 6 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.14 5.64 -109.22 -0.62 -14.75 16 14 C 0.10 1.84 5.84 -4.97 -0.03 1.81 16 15 C 0.18 2.91 6.24 -82.59 -0.52 2.39 16 16 C -0.17 -2.08 9.72 -39.44 -0.38 -2.46 16 17 C -0.05 -0.52 10.17 -39.29 -0.40 -0.92 16 18 C -0.21 -2.32 10.09 -39.37 -0.40 -2.72 16 19 C 0.30 4.50 8.41 -17.35 -0.15 4.35 16 20 F -0.12 -1.75 17.29 2.25 0.04 -1.71 16 21 N -0.51 -8.72 10.29 -9.81 -0.10 -8.82 16 22 H 0.06 1.35 7.07 -51.92 -0.37 0.99 16 23 H 0.04 0.85 7.74 -51.93 -0.40 0.45 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.01 0.22 7.60 -51.93 -0.39 -0.17 16 26 H 0.09 2.32 6.06 -51.92 -0.31 2.00 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.34 7.33 8.13 -39.29 -0.32 7.01 16 29 H 0.08 1.39 7.51 -51.93 -0.39 1.00 16 30 H 0.04 0.84 7.94 -51.93 -0.41 0.42 16 31 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -28.68 283.85 -7.19 -35.87 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.23 Total: 2.84 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.17 Total: -9.59 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.09 Total: -47.88 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.68 -7.19 -35.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852157495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.067 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds