Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09009 * 109.47034 * 179.82706 * 3 2 1 5 5 C 1.50702 * 109.47046 * 299.82361 * 3 2 1 6 6 H 1.08004 * 119.99975 * 120.00430 * 5 3 2 7 7 C 1.37875 * 120.00596 * 299.99928 * 5 3 2 8 8 N 1.31519 * 119.99752 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00411 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47157 * 120.00124 * 9 7 5 12 12 H 1.48499 * 109.47428 * 240.00521 * 9 7 5 13 13 N 1.46900 * 109.47332 * 59.82660 * 3 2 1 14 14 C 1.46903 * 110.99574 * 85.92957 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.55881 * 14 13 3 16 16 C 1.38136 * 119.60506 * 94.72489 * 15 14 13 17 17 C 1.38710 * 119.22386 * 179.77051 * 16 15 14 18 18 C 1.38543 * 118.44897 * 0.49576 * 17 16 15 19 19 C 1.38519 * 119.14166 * 359.74774 * 18 17 16 20 20 F 1.35102 * 119.65104 * 179.97438 * 19 18 17 21 21 N 1.31911 * 119.59924 * 274.99408 * 15 14 13 22 22 H 1.09009 * 109.47291 * 55.59015 * 1 2 3 23 23 H 1.08997 * 109.47094 * 295.59601 * 1 2 3 24 24 H 1.09002 * 109.46969 * 175.58861 * 1 2 3 25 25 H 1.08994 * 109.47090 * 119.99713 * 2 1 3 26 26 H 1.09008 * 109.47542 * 240.00111 * 2 1 3 27 27 H 0.96995 * 120.00248 * 179.97438 * 8 7 5 28 28 H 1.00900 * 110.99999 * 209.87775 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.55046 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.55733 * 14 13 3 31 31 H 1.08007 * 120.39000 * 359.97438 * 16 15 14 32 32 H 1.07995 * 120.77368 * 180.23798 * 17 16 15 33 33 H 1.08005 * 120.42793 * 179.77658 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5411 2.1516 -1.2327 6 1 0.9200 3.0299 -1.1363 7 6 1.8778 1.6794 -2.4835 8 7 2.6339 0.6097 -2.6010 9 14 1.2589 2.5579 -4.0113 10 1 0.4328 3.7252 -3.6107 11 1 2.4159 3.0242 -4.8170 12 1 0.4365 1.6234 -4.8209 13 7 1.5468 2.1362 1.1973 14 6 2.4393 1.9095 2.3420 15 6 1.9630 2.7216 3.5187 16 6 1.1360 2.1395 4.4597 17 6 0.7062 2.8929 5.5422 18 6 1.1177 4.2127 5.6327 19 6 1.9434 4.7309 4.6486 20 9 2.3504 6.0168 4.7264 21 7 2.3365 3.9814 3.6349 22 1 -0.3634 0.5808 -0.8479 23 1 -0.3633 0.4440 0.9268 24 1 -0.3633 -1.0246 -0.0790 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.8704 0.2772 -3.4809 28 1 1.4287 3.1226 1.0208 29 1 2.4323 0.8515 2.6041 30 1 3.4526 2.2118 2.0782 31 1 0.8303 1.1089 4.3556 32 1 0.0624 2.4620 6.2946 33 1 0.7992 4.8295 6.4602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852157495.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = -31.439930 kcal Electronic energy + Delta-G solvation = -16501.778661 eV Core-core repulsion = 13669.045239 eV Total energy + Delta-G solvation = -2832.733422 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.02467 -41.12901 -38.07736 -34.92093 -33.62624 -32.94597 -31.39723 -28.57337 -26.41230 -24.98995 -24.39619 -23.10817 -20.94173 -18.99877 -18.41158 -17.79605 -17.12820 -17.03212 -16.86753 -15.95252 -15.56164 -15.39952 -14.88449 -14.55163 -14.11040 -14.00058 -13.84455 -13.51972 -13.15190 -12.94842 -12.82359 -12.58987 -12.41365 -11.97631 -11.63849 -11.29680 -10.97992 -10.80185 -10.63435 -10.53216 -9.90788 -9.08513 -8.10784 -6.22583 -0.06563 0.19225 1.39644 1.42227 1.52914 2.40719 2.51667 2.60588 3.18037 3.43618 3.75289 3.84552 4.03244 4.13459 4.46038 4.55916 4.67023 4.78109 4.81376 4.83941 4.98250 5.04686 5.16619 5.32610 5.40433 5.57362 5.68567 5.70958 5.84311 5.91523 6.28858 6.41135 6.69808 6.73379 6.96478 7.45705 8.94338 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.005744 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.369344 B = 4873.741295 C = 5396.852651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C 0.220 3.780 4 H -0.034 1.034 5 C -0.525 4.525 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.667 5.667 14 C 0.109 3.891 15 C 0.155 3.845 16 C -0.158 4.158 17 C -0.035 4.035 18 C -0.185 4.185 19 C 0.275 3.725 20 F -0.127 7.127 21 N -0.553 5.553 22 H 0.031 0.969 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.100 0.900 30 H 0.019 0.981 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 1.958 16.818 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.112 3.888 4 H -0.017 1.017 5 C -0.563 4.563 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.297 5.297 14 C -0.021 4.021 15 C 0.018 3.982 16 C -0.178 4.178 17 C -0.060 4.060 18 C -0.206 4.206 19 C 0.121 3.879 20 F -0.107 7.107 21 N -0.270 5.270 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.038 0.962 31 H 0.184 0.816 32 H 0.210 0.790 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.700 1.747 16.227 16.984 hybrid contribution 0.630 1.070 -0.990 1.588 sum -4.070 2.817 15.237 16.021 Atomic orbital electron populations 1.21316 0.95831 0.98472 1.00915 1.21310 0.96399 0.96979 0.98998 1.19010 0.90882 0.92566 0.86332 1.01689 1.21450 1.31468 1.11888 0.91529 0.92990 1.25579 0.95219 0.95666 1.01577 1.70009 1.37545 1.23780 1.24020 0.85583 0.78069 0.78729 0.79722 1.19511 1.20921 1.20325 1.60814 1.48080 1.15561 1.05271 1.20898 0.93894 0.98698 0.88638 1.20966 0.93730 0.87774 0.95730 1.22316 0.97515 1.03542 0.94464 1.22015 0.95511 0.91630 0.96848 1.22175 0.99622 0.98483 1.00349 1.18553 0.95957 0.80122 0.93263 1.91579 1.89369 1.34078 1.95649 1.66604 1.27089 1.08512 1.24756 0.94943 0.92610 0.94581 0.95199 0.92363 0.92927 0.85652 0.88208 0.96237 0.81617 0.79001 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.52 71.98 0.69 -3.90 16 2 C -0.10 -4.63 5.59 30.59 0.17 -4.46 16 3 C 0.22 11.09 2.30 44.17 0.10 11.20 16 4 H -0.03 -1.96 7.71 -2.38 -0.02 -1.98 16 5 C -0.52 -28.80 7.26 25.60 0.19 -28.61 16 6 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -52.40 11.32 21.45 0.24 -52.16 16 9 Si 0.95 44.02 29.54 68.60 2.03 46.04 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.67 -28.31 5.64 -499.45 -2.82 -31.13 16 14 C 0.11 3.92 5.84 85.56 0.50 4.42 16 15 C 0.15 4.82 6.24 42.52 0.27 5.09 16 16 C -0.16 -3.48 9.72 22.36 0.22 -3.27 16 17 C -0.03 -0.55 10.17 22.46 0.23 -0.32 16 18 C -0.19 -3.48 10.09 22.41 0.23 -3.26 16 19 C 0.27 7.84 8.41 84.73 0.71 8.55 16 20 F -0.13 -3.76 17.29 44.97 0.78 -2.98 16 21 N -0.55 -19.09 10.29 -184.95 -1.90 -20.99 16 22 H 0.03 1.51 7.07 -2.38 -0.02 1.49 16 23 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.26 7.60 -2.39 -0.02 1.24 16 26 H 0.06 3.12 6.06 -2.38 -0.01 3.10 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.33 14.75 8.13 -89.69 -0.73 14.02 16 29 H 0.10 3.22 7.51 -2.39 -0.02 3.21 16 30 H 0.02 0.79 7.94 -2.39 -0.02 0.77 16 31 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -64.57 283.85 2.46 -62.11 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.39 Total: 12.17 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 3.74 Total: -13.07 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -4.47 Total: -104.28 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -64.57 2.46 -62.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852157495.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.671 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds