Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47427 * 2 1 4 4 C 1.46895 * 111.00267 * 199.72234 * 3 2 1 5 5 C 1.50708 * 109.46841 * 66.04707 * 4 3 2 6 6 H 1.07993 * 120.00148 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31524 * 120.00166 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00118 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47320 * 90.00112 * 9 7 5 11 11 H 1.48504 * 109.47406 * 209.99894 * 9 7 5 12 12 H 1.48498 * 109.47242 * 330.00109 * 9 7 5 13 13 C 1.46905 * 110.99897 * 75.76990 * 3 2 1 14 14 C 1.50693 * 109.46909 * 199.75985 * 13 3 2 15 15 C 1.38754 * 120.77091 * 264.42593 * 14 13 3 16 16 C 1.38103 * 119.22526 * 180.02562 * 15 14 13 17 17 N 1.31939 * 120.79532 * 0.02562 * 16 15 14 18 18 C 1.32023 * 121.69073 * 359.68631 * 17 16 15 19 19 F 1.35105 * 119.65010 * 180.28926 * 18 17 16 20 20 C 1.38502 * 120.77979 * 84.45464 * 14 13 3 21 21 H 1.09007 * 109.46971 * 54.85755 * 1 2 3 22 22 H 1.09003 * 109.47110 * 174.85311 * 1 2 3 23 23 H 1.09001 * 109.47416 * 294.85611 * 1 2 3 24 24 H 1.09001 * 109.47408 * 239.99663 * 2 1 3 25 25 H 1.09001 * 109.46855 * 120.00006 * 2 1 3 26 26 H 1.09002 * 109.47257 * 186.04566 * 4 3 2 27 27 H 1.09003 * 109.47449 * 306.04816 * 4 3 2 28 28 H 0.96996 * 119.99921 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47114 * 79.75250 * 13 3 2 30 30 H 1.09007 * 109.46794 * 319.75527 * 13 3 2 31 31 H 1.07998 * 120.38871 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.60357 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.42819 * 359.94995 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4123 1.4509 -0.4628 5 6 3.4793 1.0470 -1.9132 6 1 2.5777 0.7686 -2.4384 7 6 4.6918 1.0317 -2.5692 8 7 5.7900 1.3702 -1.9294 9 14 4.7750 0.5304 -4.3667 10 1 4.6078 1.7314 -5.2239 11 1 6.0919 -0.0970 -4.6452 12 1 3.6916 -0.4419 -4.6601 13 6 1.8774 1.9936 1.3294 14 6 1.9169 3.4946 1.2014 15 6 3.1013 4.1922 1.3909 16 6 3.1010 5.5676 1.2663 17 7 1.9922 6.2190 0.9714 18 6 0.8481 5.5889 0.7786 19 9 -0.2613 6.2966 0.4726 20 6 0.7720 4.2100 0.8925 21 1 -0.3633 0.5916 -0.8404 22 1 -0.3633 -1.0235 -0.0922 23 1 -0.3634 0.4320 0.9325 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7842 2.4695 -0.3518 27 1 4.0253 0.7735 0.1317 28 1 6.6431 1.3591 -2.3909 29 1 2.6942 1.6619 1.9703 30 1 0.9261 1.6913 1.7674 31 1 4.0127 3.6658 1.6329 32 1 4.0195 6.1167 1.4121 33 1 -0.1671 3.6994 0.7380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859154679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = -8.180166 kcal Electronic energy + Delta-G solvation = -16727.020074 eV Core-core repulsion = 13895.295271 eV Total energy + Delta-G solvation = -2831.724803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.75668 -39.87141 -37.07499 -33.13672 -32.55042 -30.64424 -29.91442 -27.65393 -25.12194 -23.44718 -22.43411 -21.93677 -19.95247 -17.31286 -17.02473 -16.39658 -15.80773 -15.79293 -15.06062 -14.52559 -14.34875 -13.90803 -13.85651 -13.34021 -12.80899 -12.61765 -12.21340 -12.11862 -11.89329 -11.50670 -11.22076 -11.05951 -10.74622 -10.59300 -10.26389 -9.96680 -9.52317 -9.39006 -9.20886 -8.73370 -8.48529 -7.41026 -6.09000 -4.09869 1.21012 1.37129 3.28869 3.35229 3.38100 3.76541 3.88436 4.38461 4.67765 4.82620 5.09617 5.20396 5.27527 5.30928 5.51798 5.65706 5.73664 5.85997 5.94033 6.01652 6.03535 6.09077 6.27253 6.55035 6.62550 6.70901 6.88217 7.18285 7.23514 7.72339 7.86862 7.98503 8.09123 8.43951 8.97141 9.54440 11.01852 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.007383 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.642698 B = 3791.523606 C = 4367.288041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.509 4.509 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.085 3.915 14 C 0.012 3.988 15 C -0.166 4.166 16 C 0.131 3.869 17 N -0.523 5.523 18 C 0.296 3.704 19 F -0.120 7.120 20 C -0.173 4.173 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.020 0.980 26 H 0.035 0.965 27 H -0.008 1.008 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 2.170 7.863 10.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 N -0.256 5.256 4 C 0.064 3.936 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.043 4.043 14 C 0.004 3.996 15 C -0.187 4.187 16 C -0.025 4.025 17 N -0.238 5.238 18 C 0.142 3.858 19 F -0.100 7.100 20 C -0.195 4.195 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.009 0.991 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.442 3.358 7.416 11.030 hybrid contribution 0.523 -1.367 -0.523 1.554 sum -6.920 1.991 6.893 9.968 Atomic orbital electron populations 1.21816 0.96517 1.00531 1.01400 1.21996 0.94270 0.89707 1.01244 1.62152 1.25984 1.17166 1.20337 1.19835 0.81063 0.97149 0.95516 1.21134 0.93330 1.44877 0.95384 0.91847 1.24968 0.95627 0.95512 0.98384 1.69944 0.98445 1.48648 1.36638 0.86515 0.77275 0.78761 0.84986 1.20624 1.21278 1.19840 1.21076 1.01272 0.88912 0.93069 1.20163 0.91690 0.96634 0.91147 1.22187 0.99131 0.95365 1.01990 1.22395 0.94483 0.91681 0.93929 1.66928 0.98762 1.42420 1.15714 1.18106 0.82733 0.86864 0.98061 1.91582 1.48540 1.79683 1.90155 1.21604 1.01282 0.92141 1.04485 0.92055 0.93229 0.93862 0.89262 0.96138 0.94690 0.99064 0.92892 0.93797 0.90428 0.83955 0.81875 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.96 37.16 0.37 -1.73 16 2 C 0.06 1.00 5.51 -3.83 -0.02 0.98 16 3 N -0.53 -10.62 4.34 -237.52 -1.03 -11.66 16 4 C 0.19 4.64 4.55 -4.97 -0.02 4.62 16 5 C -0.51 -13.83 8.23 -34.44 -0.28 -14.11 16 6 H 0.06 1.72 7.31 -52.49 -0.38 1.34 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.08 1.38 4.99 -4.98 -0.02 1.36 16 14 C 0.01 0.20 5.05 -104.34 -0.53 -0.33 16 15 C -0.17 -2.62 8.56 -39.44 -0.34 -2.95 16 16 C 0.13 1.98 11.18 -17.56 -0.20 1.78 16 17 N -0.52 -8.92 10.37 -13.59 -0.14 -9.06 16 18 C 0.30 4.94 8.41 -17.35 -0.15 4.80 16 19 F -0.12 -1.96 17.29 2.25 0.04 -1.92 16 20 C -0.17 -2.73 9.81 -39.36 -0.39 -3.11 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.56 6.89 -51.93 -0.36 0.20 16 24 H 0.09 1.81 6.58 -51.93 -0.34 1.47 16 25 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 26 H 0.04 0.91 6.38 -51.93 -0.33 0.58 16 27 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 0.71 7.92 -51.93 -0.41 0.29 16 30 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 31 H 0.14 2.13 8.01 -52.49 -0.42 1.71 16 32 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.14 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -29.69 284.33 -7.06 -36.74 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.25 Total: -2.38 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.67 Total: -7.23 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.44 Total: -45.84 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.69 -7.06 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859154679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.561 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds