Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47427 * 2 1 4 4 C 1.46895 * 111.00267 * 199.72234 * 3 2 1 5 5 C 1.50708 * 109.46841 * 66.04707 * 4 3 2 6 6 H 1.07993 * 120.00148 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31524 * 120.00166 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00118 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47320 * 90.00112 * 9 7 5 11 11 H 1.48504 * 109.47406 * 209.99894 * 9 7 5 12 12 H 1.48498 * 109.47242 * 330.00109 * 9 7 5 13 13 C 1.46905 * 110.99897 * 75.76990 * 3 2 1 14 14 C 1.50693 * 109.46909 * 199.75985 * 13 3 2 15 15 C 1.38754 * 120.77091 * 264.42593 * 14 13 3 16 16 C 1.38103 * 119.22526 * 180.02562 * 15 14 13 17 17 N 1.31939 * 120.79532 * 0.02562 * 16 15 14 18 18 C 1.32023 * 121.69073 * 359.68631 * 17 16 15 19 19 F 1.35105 * 119.65010 * 180.28926 * 18 17 16 20 20 C 1.38502 * 120.77979 * 84.45464 * 14 13 3 21 21 H 1.09007 * 109.46971 * 54.85755 * 1 2 3 22 22 H 1.09003 * 109.47110 * 174.85311 * 1 2 3 23 23 H 1.09001 * 109.47416 * 294.85611 * 1 2 3 24 24 H 1.09001 * 109.47408 * 239.99663 * 2 1 3 25 25 H 1.09001 * 109.46855 * 120.00006 * 2 1 3 26 26 H 1.09002 * 109.47257 * 186.04566 * 4 3 2 27 27 H 1.09003 * 109.47449 * 306.04816 * 4 3 2 28 28 H 0.96996 * 119.99921 * 179.97438 * 8 7 5 29 29 H 1.08994 * 109.47114 * 79.75250 * 13 3 2 30 30 H 1.09007 * 109.46794 * 319.75527 * 13 3 2 31 31 H 1.07998 * 120.38871 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.60357 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.42819 * 359.94995 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4123 1.4509 -0.4628 5 6 3.4793 1.0470 -1.9132 6 1 2.5777 0.7686 -2.4384 7 6 4.6918 1.0317 -2.5692 8 7 5.7900 1.3702 -1.9294 9 14 4.7750 0.5304 -4.3667 10 1 4.6078 1.7314 -5.2239 11 1 6.0919 -0.0970 -4.6452 12 1 3.6916 -0.4419 -4.6601 13 6 1.8774 1.9936 1.3294 14 6 1.9169 3.4946 1.2014 15 6 3.1013 4.1922 1.3909 16 6 3.1010 5.5676 1.2663 17 7 1.9922 6.2190 0.9714 18 6 0.8481 5.5889 0.7786 19 9 -0.2613 6.2966 0.4726 20 6 0.7720 4.2100 0.8925 21 1 -0.3633 0.5916 -0.8404 22 1 -0.3633 -1.0235 -0.0922 23 1 -0.3634 0.4320 0.9325 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7842 2.4695 -0.3518 27 1 4.0253 0.7735 0.1317 28 1 6.6431 1.3591 -2.3909 29 1 2.6942 1.6619 1.9703 30 1 0.9261 1.6913 1.7674 31 1 4.0127 3.6658 1.6329 32 1 4.0195 6.1167 1.4121 33 1 -0.1671 3.6994 0.7380 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859154679.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = -26.865469 kcal Electronic energy + Delta-G solvation = -16727.830330 eV Core-core repulsion = 13895.295271 eV Total energy + Delta-G solvation = -2832.535059 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.02087 -41.13077 -38.59241 -34.90042 -34.12839 -31.89959 -31.36276 -29.34742 -26.72008 -24.76588 -24.11739 -23.24779 -21.46346 -18.72280 -18.45079 -18.14828 -17.08403 -17.05729 -16.77352 -16.05348 -15.91209 -15.36896 -15.15237 -14.66448 -14.26031 -14.05745 -13.92811 -13.48398 -13.37074 -12.90149 -12.76338 -12.62651 -12.50215 -12.33016 -11.83739 -11.62568 -11.28990 -10.72006 -10.67824 -10.59061 -9.96486 -9.02634 -8.19741 -6.27349 -0.03134 0.11219 1.40115 1.41360 1.51361 2.39634 2.52375 2.64454 3.13746 3.36755 3.50421 3.80911 3.98451 4.08493 4.25246 4.35989 4.53256 4.58651 4.66388 4.78898 4.81886 4.83411 5.06206 5.14580 5.22532 5.30818 5.40288 5.50757 5.65499 5.67687 6.08435 6.35624 6.62612 6.63191 6.88322 7.41341 8.90731 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.007383 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.642698 B = 3791.523606 C = 4367.288041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.087 3.913 14 C -0.001 4.001 15 C -0.174 4.174 16 C 0.131 3.869 17 N -0.542 5.542 18 C 0.282 3.718 19 F -0.121 7.121 20 C -0.169 4.169 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.017 0.983 27 H -0.035 1.035 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.145 0.855 32 H 0.193 0.807 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 1.824 7.901 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 N -0.264 5.264 4 C 0.079 3.921 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.189 1.189 13 C -0.040 4.040 14 C -0.010 4.010 15 C -0.194 4.194 16 C -0.024 4.024 17 N -0.257 5.257 18 C 0.129 3.871 19 F -0.100 7.100 20 C -0.190 4.190 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.035 0.965 27 H -0.018 1.018 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.163 0.837 32 H 0.210 0.790 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.548 3.006 7.463 11.739 hybrid contribution 0.854 -1.252 -0.478 1.589 sum -7.694 1.754 6.985 10.539 Atomic orbital electron populations 1.21723 0.93337 1.01978 1.02105 1.22039 0.96763 0.88387 1.00244 1.62058 1.22792 1.18652 1.22902 1.19455 0.83410 0.95089 0.94116 1.21467 0.93219 1.44550 0.96824 0.92300 1.25780 0.95378 0.95589 1.02544 1.70051 0.98910 1.49707 1.38279 0.85532 0.77555 0.78502 0.79951 1.20423 1.20746 1.18941 1.21147 1.02943 0.88715 0.91223 1.20274 0.92166 0.96715 0.91800 1.22356 0.99254 0.95866 1.01921 1.22859 0.95000 0.91703 0.92869 1.66966 0.99342 1.43109 1.16308 1.18299 0.82807 0.87373 0.98632 1.91576 1.48500 1.79728 1.90207 1.21745 1.01883 0.91747 1.03661 0.93057 0.91142 0.91691 0.92250 0.95213 0.96480 1.01751 0.92800 0.93639 0.87361 0.83692 0.78994 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.96 71.98 0.72 -2.79 16 2 C 0.05 1.85 5.51 86.30 0.48 2.33 16 3 N -0.54 -21.15 4.34 -905.37 -3.93 -25.08 16 4 C 0.21 10.21 4.55 85.56 0.39 10.60 16 5 C -0.52 -28.66 8.23 25.60 0.21 -28.45 16 6 H 0.06 3.21 7.31 -2.91 -0.02 3.19 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 C 0.09 2.70 4.99 85.55 0.43 3.13 16 14 C 0.00 -0.03 5.05 -19.68 -0.10 -0.13 16 15 C -0.17 -5.34 8.56 22.36 0.19 -5.15 16 16 C 0.13 3.83 11.18 84.64 0.95 4.78 16 17 N -0.54 -17.94 10.37 -196.92 -2.04 -19.99 16 18 C 0.28 9.11 8.41 84.74 0.71 9.82 16 19 F -0.12 -3.80 17.29 44.97 0.78 -3.03 16 20 C -0.17 -5.04 9.81 22.41 0.22 -4.82 16 21 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.42 6.89 -2.39 -0.02 1.41 16 24 H 0.06 2.40 6.58 -2.39 -0.02 2.39 16 25 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 26 H 0.02 0.91 6.38 -2.39 -0.02 0.89 16 27 H -0.04 -1.90 8.12 -2.39 -0.02 -1.92 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.05 1.41 7.92 -2.39 -0.02 1.39 16 30 H 0.11 2.68 6.55 -2.38 -0.02 2.66 16 31 H 0.15 4.32 8.01 -2.91 -0.02 4.29 16 32 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -63.24 284.33 2.86 -60.37 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.10 Total: 5.68 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.65 Total: -9.91 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -5.69 Total: -98.92 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -63.24 2.86 -60.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859154679.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.507 kcal (2) G-P(sol) polarization free energy of solvation -63.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds