Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46605 * 2 1 4 4 H 1.09001 * 109.47194 * 54.79027 * 3 2 1 5 5 C 1.50710 * 109.46456 * 174.78524 * 3 2 1 6 6 H 1.08002 * 119.99618 * 120.00726 * 5 3 2 7 7 C 1.37865 * 120.00009 * 299.99680 * 5 3 2 8 8 N 1.31516 * 120.00276 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00396 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47086 * 89.99637 * 9 7 5 11 11 H 1.48499 * 109.47123 * 210.00032 * 9 7 5 12 12 H 1.48505 * 109.46775 * 330.00177 * 9 7 5 13 13 N 1.46896 * 109.47135 * 294.78079 * 3 2 1 14 14 C 1.46902 * 110.99822 * 154.12922 * 13 3 2 15 15 C 1.50701 * 109.47288 * 185.61642 * 14 13 3 16 16 C 1.38751 * 120.77313 * 269.72296 * 15 14 13 17 17 C 1.38103 * 119.22284 * 179.77485 * 16 15 14 18 18 N 1.31937 * 120.79844 * 0.50559 * 17 16 15 19 19 C 1.32028 * 121.68729 * 359.74660 * 18 17 16 20 20 F 1.35099 * 119.64889 * 180.02562 * 19 18 17 21 21 C 1.38503 * 120.77394 * 89.99845 * 15 14 13 22 22 H 1.09002 * 109.47352 * 300.00100 * 1 2 3 23 23 H 1.08994 * 109.47248 * 60.00222 * 1 2 3 24 24 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46830 * 240.00513 * 2 1 3 26 26 H 1.08994 * 109.47248 * 119.99778 * 2 1 3 27 27 H 0.96999 * 120.00484 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00280 * 278.08395 * 13 3 2 29 29 H 1.08995 * 109.47037 * 305.61732 * 14 13 3 30 30 H 1.09002 * 109.47462 * 65.61606 * 14 13 3 31 31 H 1.07999 * 120.38849 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.60037 * 180.27206 * 17 16 15 33 33 H 1.08005 * 120.43320 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6023 1.9826 0.8397 5 6 3.5415 1.4445 0.1292 6 1 4.1494 1.8882 -0.6454 7 6 4.1388 0.8801 1.2360 8 7 5.4491 0.8822 1.3490 9 14 3.0873 0.1122 2.5755 10 1 2.8675 -1.3243 2.2698 11 1 3.7800 0.2398 3.8828 12 1 1.7783 0.8107 2.6385 13 7 1.6558 2.0977 -1.2574 14 6 1.5561 3.5530 -1.0837 15 6 1.0286 4.1752 -2.3509 16 6 1.8955 4.5980 -3.3484 17 6 1.3771 5.1597 -4.4986 18 7 0.0747 5.3056 -4.6515 19 6 -0.7802 4.9200 -3.7223 20 9 -2.1056 5.0887 -3.9221 21 6 -0.3324 4.3436 -2.5444 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.8695 0.4854 2.1280 28 1 2.3005 1.8652 -1.9980 29 1 0.8775 3.7750 -0.2602 30 1 2.5423 3.9609 -0.8619 31 1 2.9629 4.4862 -3.2281 32 1 2.0460 5.4868 -5.2809 33 1 -1.0356 4.0303 -1.7869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859329288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = -10.613179 kcal Electronic energy + Delta-G solvation = -16504.658262 eV Core-core repulsion = 13672.827955 eV Total energy + Delta-G solvation = -2831.830307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.94804 -40.03069 -36.73350 -33.93483 -32.09189 -31.03450 -30.77230 -27.42028 -25.16376 -23.59585 -22.57563 -21.53784 -19.99979 -17.53709 -17.24261 -16.94531 -16.01805 -16.00026 -15.28267 -14.67524 -14.28038 -13.87572 -13.69577 -13.33210 -12.96348 -12.80509 -12.40884 -12.24153 -11.97814 -11.73059 -11.46611 -11.05686 -10.71580 -10.43524 -9.90678 -9.74545 -9.67015 -9.48008 -9.31402 -8.97629 -8.67244 -7.56871 -6.22364 -4.24684 0.97355 1.15346 3.19524 3.30263 3.31948 3.59183 3.64211 4.28464 4.50066 4.71398 4.98278 5.09360 5.10799 5.28359 5.54913 5.58876 5.81686 5.92828 5.97702 5.99146 6.15339 6.19273 6.42277 6.60837 6.64947 6.67238 6.86832 6.98526 7.15691 7.42799 7.64520 7.82552 8.19276 8.34312 8.78092 9.40456 10.90275 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.005896 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.384452 B = 4747.631092 C = 5286.791123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.073 0.927 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.674 5.674 14 C 0.095 3.905 15 C 0.006 3.994 16 C -0.177 4.177 17 C 0.131 3.869 18 N -0.524 5.524 19 C 0.298 3.702 20 F -0.119 7.119 21 C -0.176 4.176 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.265 0.735 28 H 0.338 0.662 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 5.728 -6.389 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.589 4.589 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.189 1.189 13 N -0.304 5.304 14 C -0.034 4.034 15 C -0.003 4.003 16 C -0.197 4.197 17 C -0.025 4.025 18 N -0.239 5.239 19 C 0.145 3.855 20 F -0.098 7.098 21 C -0.197 4.197 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.182 0.818 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.693 5.943 -6.920 13.311 hybrid contribution 0.663 -0.628 1.525 1.777 sum -9.030 5.316 -5.396 11.786 Atomic orbital electron populations 1.21742 0.97513 0.99472 1.01433 1.21817 0.93883 0.99144 1.00541 1.19613 0.94504 0.90744 0.87589 0.94807 1.21701 0.90365 1.39645 1.07238 0.90880 1.24998 0.94787 0.95154 0.97944 1.69906 1.08992 1.44741 1.29627 0.86817 0.80587 0.79946 0.80677 1.20381 1.22526 1.18919 1.60805 1.55226 1.04664 1.09658 1.20861 1.00182 0.90427 0.91922 1.20439 0.91996 0.91644 0.96198 1.22216 1.01959 1.00955 0.94612 1.22434 0.89151 0.94402 0.96546 1.66953 1.04715 1.20573 1.31672 1.18159 0.78891 0.97016 0.91431 1.91597 1.29623 1.93204 1.95346 1.21739 0.97274 1.02778 0.97940 0.94188 0.91918 0.94745 0.92320 0.93582 0.92509 0.84538 0.90342 0.92763 0.83838 0.81835 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.80 37.16 0.36 -2.17 16 2 C -0.12 -2.40 5.11 -26.73 -0.14 -2.54 16 3 C 0.18 3.99 1.57 -68.86 -0.11 3.88 16 4 H 0.03 0.77 6.75 -51.93 -0.35 0.42 16 5 C -0.55 -14.28 9.06 -34.44 -0.31 -14.59 16 6 H 0.07 2.04 7.97 -52.49 -0.42 1.62 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -26.24 13.96 55.43 0.77 -25.47 16 9 Si 0.89 21.13 24.41 -169.99 -4.15 16.98 16 10 H -0.28 -6.47 6.83 56.52 0.39 -6.08 16 11 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.00 6.53 56.52 0.37 -5.63 16 13 N -0.67 -12.25 5.67 -109.21 -0.62 -12.87 16 14 C 0.10 1.52 5.69 -4.97 -0.03 1.49 16 15 C 0.01 0.08 5.48 -104.33 -0.57 -0.49 16 16 C -0.18 -2.18 9.81 -39.44 -0.39 -2.57 16 17 C 0.13 1.56 11.18 -17.56 -0.20 1.36 16 18 N -0.52 -7.53 10.37 -13.59 -0.14 -7.67 16 19 C 0.30 4.28 8.41 -17.35 -0.15 4.14 16 20 F -0.12 -1.70 17.29 2.25 0.04 -1.66 16 21 C -0.18 -2.38 9.79 -39.36 -0.39 -2.76 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.06 7.76 -51.93 -0.40 0.65 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 1.02 3.21 -51.93 -0.17 0.86 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.34 6.21 8.45 -39.29 -0.33 5.88 16 29 H 0.08 1.21 7.87 -51.93 -0.41 0.81 16 30 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -28.73 280.51 -6.09 -34.82 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.22 Total: 3.95 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.00 Total: -12.32 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.01 Total: -46.00 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.15 Total: 16.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.73 -6.09 -34.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859329288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.207 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds