Wall clock time and date at job start Sun Mar 29 2020 22:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46605 * 2 1 4 4 H 1.09001 * 109.47194 * 54.79027 * 3 2 1 5 5 C 1.50710 * 109.46456 * 174.78524 * 3 2 1 6 6 H 1.08002 * 119.99618 * 120.00726 * 5 3 2 7 7 C 1.37865 * 120.00009 * 299.99680 * 5 3 2 8 8 N 1.31516 * 120.00276 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00396 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47086 * 89.99637 * 9 7 5 11 11 H 1.48499 * 109.47123 * 210.00032 * 9 7 5 12 12 H 1.48505 * 109.46775 * 330.00177 * 9 7 5 13 13 N 1.46896 * 109.47135 * 294.78079 * 3 2 1 14 14 C 1.46902 * 110.99822 * 154.12922 * 13 3 2 15 15 C 1.50701 * 109.47288 * 185.61642 * 14 13 3 16 16 C 1.38751 * 120.77313 * 269.72296 * 15 14 13 17 17 C 1.38103 * 119.22284 * 179.77485 * 16 15 14 18 18 N 1.31937 * 120.79844 * 0.50559 * 17 16 15 19 19 C 1.32028 * 121.68729 * 359.74660 * 18 17 16 20 20 F 1.35099 * 119.64889 * 180.02562 * 19 18 17 21 21 C 1.38503 * 120.77394 * 89.99845 * 15 14 13 22 22 H 1.09002 * 109.47352 * 300.00100 * 1 2 3 23 23 H 1.08994 * 109.47248 * 60.00222 * 1 2 3 24 24 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46830 * 240.00513 * 2 1 3 26 26 H 1.08994 * 109.47248 * 119.99778 * 2 1 3 27 27 H 0.96999 * 120.00484 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00280 * 278.08395 * 13 3 2 29 29 H 1.08995 * 109.47037 * 305.61732 * 14 13 3 30 30 H 1.09002 * 109.47462 * 65.61606 * 14 13 3 31 31 H 1.07999 * 120.38849 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.60037 * 180.27206 * 17 16 15 33 33 H 1.08005 * 120.43320 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6023 1.9826 0.8397 5 6 3.5415 1.4445 0.1292 6 1 4.1494 1.8882 -0.6454 7 6 4.1388 0.8801 1.2360 8 7 5.4491 0.8822 1.3490 9 14 3.0873 0.1122 2.5755 10 1 2.8675 -1.3243 2.2698 11 1 3.7800 0.2398 3.8828 12 1 1.7783 0.8107 2.6385 13 7 1.6558 2.0977 -1.2574 14 6 1.5561 3.5530 -1.0837 15 6 1.0286 4.1752 -2.3509 16 6 1.8955 4.5980 -3.3484 17 6 1.3771 5.1597 -4.4986 18 7 0.0747 5.3056 -4.6515 19 6 -0.7802 4.9200 -3.7223 20 9 -2.1056 5.0887 -3.9221 21 6 -0.3324 4.3436 -2.5444 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.8695 0.4854 2.1280 28 1 2.3005 1.8652 -1.9980 29 1 0.8775 3.7750 -0.2602 30 1 2.5423 3.9609 -0.8619 31 1 2.9629 4.4862 -3.2281 32 1 2.0460 5.4868 -5.2809 33 1 -1.0356 4.0303 -1.7869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859329288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:12 Heat of formation + Delta-G solvation = -29.997940 kcal Electronic energy + Delta-G solvation = -16505.498848 eV Core-core repulsion = 13672.827955 eV Total energy + Delta-G solvation = -2832.670893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.02847 -41.08611 -38.30670 -35.32209 -34.02820 -32.35579 -31.81063 -29.09658 -26.61685 -24.62182 -24.22042 -22.72476 -21.69228 -19.17334 -18.46770 -18.23102 -17.15275 -17.06079 -17.00595 -16.06042 -15.67566 -15.16111 -15.02726 -14.84021 -14.40663 -14.19478 -13.79787 -13.67455 -13.33915 -13.16740 -13.03830 -12.61462 -12.36968 -12.11959 -11.60645 -11.32827 -11.20136 -10.82650 -10.74685 -10.61919 -9.99123 -9.14702 -8.32720 -6.37759 -0.05014 0.09107 1.31943 1.36700 1.46436 2.30429 2.55823 2.61069 3.03535 3.37587 3.62679 3.90961 3.97915 4.08147 4.32565 4.46471 4.48157 4.58758 4.68998 4.79450 4.85967 4.86626 4.95942 5.16794 5.27436 5.35273 5.44158 5.48872 5.64288 5.65044 6.05125 6.35141 6.58781 6.63363 6.76328 7.31511 8.83066 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.005896 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.384452 B = 4747.631092 C = 5286.791123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.190 3.810 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.040 0.960 7 C 0.018 3.982 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.303 1.303 12 H -0.244 1.244 13 N -0.664 5.664 14 C 0.100 3.900 15 C -0.003 4.003 16 C -0.173 4.173 17 C 0.137 3.863 18 N -0.541 5.541 19 C 0.285 3.715 20 F -0.122 7.122 21 C -0.172 4.172 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.336 0.664 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.156 0.844 32 H 0.199 0.801 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 5.717 -6.677 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.081 3.919 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.058 0.942 7 C -0.181 4.181 8 N -0.585 5.585 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.168 1.168 13 N -0.293 5.293 14 C -0.029 4.029 15 C -0.011 4.011 16 C -0.194 4.194 17 C -0.019 4.019 18 N -0.257 5.257 19 C 0.132 3.868 20 F -0.101 7.101 21 C -0.194 4.194 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.216 0.784 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.396 5.944 -7.227 14.745 hybrid contribution 1.246 -0.548 1.502 2.027 sum -10.150 5.395 -5.725 12.841 Atomic orbital electron populations 1.21655 0.94628 1.01012 1.02004 1.21765 0.96431 0.97708 0.99707 1.19467 0.91376 0.92063 0.89035 0.95064 1.22056 0.92713 1.37809 1.05800 0.94177 1.25806 0.95704 0.96064 1.00490 1.70048 1.10950 1.46849 1.30658 0.85893 0.79693 0.79609 0.77463 1.19557 1.23123 1.16773 1.60789 1.54421 1.06108 1.07953 1.20810 0.99707 0.88949 0.93476 1.20241 0.92448 0.92659 0.95794 1.22408 1.02479 1.00156 0.94316 1.22979 0.88716 0.93195 0.97038 1.67011 1.05682 1.20987 1.32024 1.18280 0.78906 0.97754 0.91872 1.91583 1.29871 1.93301 1.95393 1.21779 0.97268 1.02366 0.97957 0.93721 0.91226 0.92783 0.92726 0.94930 0.92631 0.84725 0.89722 0.94224 0.82626 0.78395 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.80 71.98 0.71 -3.59 16 2 C -0.12 -4.65 5.11 30.60 0.16 -4.49 16 3 C 0.19 8.00 1.57 44.17 0.07 8.06 16 4 H 0.03 1.35 6.75 -2.39 -0.02 1.34 16 5 C -0.54 -28.48 9.06 25.60 0.23 -28.25 16 6 H 0.04 2.31 7.97 -2.91 -0.02 2.28 16 7 C 0.02 0.98 5.45 84.65 0.46 1.44 16 8 N -0.95 -56.72 13.96 21.44 0.30 -56.42 16 9 Si 0.95 43.12 24.41 68.60 1.67 44.79 16 10 H -0.27 -11.86 6.83 99.48 0.68 -11.18 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.24 -10.21 6.53 99.48 0.65 -9.56 16 13 N -0.66 -23.26 5.67 -499.44 -2.83 -26.09 16 14 C 0.10 3.05 5.69 85.56 0.49 3.53 16 15 C 0.00 -0.08 5.48 -19.68 -0.11 -0.19 16 16 C -0.17 -3.94 9.81 22.36 0.22 -3.72 16 17 C 0.14 2.91 11.18 84.64 0.95 3.86 16 18 N -0.54 -14.51 10.37 -196.92 -2.04 -16.56 16 19 C 0.28 7.72 8.41 84.74 0.71 8.44 16 20 F -0.12 -3.36 17.29 44.97 0.78 -2.58 16 21 C -0.17 -4.35 9.79 22.41 0.22 -4.13 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 2.11 7.76 -2.39 -0.02 2.09 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.03 1.37 3.21 -2.39 -0.01 1.36 16 27 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.34 12.10 8.45 -89.69 -0.76 11.35 16 29 H 0.08 2.48 7.87 -2.39 -0.02 2.46 16 30 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -61.43 280.51 2.25 -59.18 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.27 Total: 16.71 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.10 Total: -19.03 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -4.57 Total: -99.06 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.67 Total: 44.79 kcal Total: -61.43 2.25 -59.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859329288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.179 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds